Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756240.1:11201239-11216781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.034 2.9 9.4 0.0 3 23 142 162 140 162 0.96

2 15 0.0024 0.21 13.0 3.1 1 23 332 354 332 354 0.99

3 15 9.1e-05 0.0079 17.5 0.4 1 23 360 383 360 383 0.96

4 15 0.22 20 6.8 7.0 1 23 388 411 388 411 0.94

5 15 0.00044 0.038 15.3 1.0 2 23 607 628 606 628 0.97

6 15 3.9e-05 0.0034 18.7 3.1 1 23 634 656 634 656 0.99

7 15 1.3 1.1e+02 4.4 8.3 1 23 723 745 723 745 0.97

8 15 1.2 1e+02 4.5 0.3 1 23 752 774 752 774 0.92

9 15 0.0022 0.2 13.1 1.1 1 23 780 802 780 802 0.97

10 15 0.0013 0.11 13.9 3.1 1 23 808 830 808 830 0.98

11 15 0.027 2.4 9.7 5.1 1 23 839 861 839 861 0.98

12 15 0.00067 0.059 14.8 0.6 3 23 909 929 908 929 0.97

13 15 0.031 2.7 9.5 5.4 1 23 946 968 946 968 0.95

14 15 3.4e-06 0.00029 22.0 0.7 1 23 974 996 974 996 0.98

15 15 0.0008 0.07 14.5 6.5 1 23 1002 1025 1002 1025 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.034	2.9	9.4	0.0	3	23	142	162	140	162	0.96
2	15	0.0024	0.21	13.0	3.1	1	23	332	354	332	354	0.99
3	15	9.1e-05	0.0079	17.5	0.4	1	23	360	383	360	383	0.96
4	15	0.22	20	6.8	7.0	1	23	388	411	388	411	0.94
5	15	0.00044	0.038	15.3	1.0	2	23	607	628	606	628	0.97
6	15	3.9e-05	0.0034	18.7	3.1	1	23	634	656	634	656	0.99
7	15	1.3	1.1e+02	4.4	8.3	1	23	723	745	723	745	0.97
8	15	1.2	1e+02	4.5	0.3	1	23	752	774	752	774	0.92
9	15	0.0022	0.2	13.1	1.1	1	23	780	802	780	802	0.97
10	15	0.0013	0.11	13.9	3.1	1	23	808	830	808	830	0.98
11	15	0.027	2.4	9.7	5.1	1	23	839	861	839	861	0.98
12	15	0.00067	0.059	14.8	0.6	3	23	909	929	908	929	0.97
13	15	0.031	2.7	9.5	5.4	1	23	946	968	946	968	0.95
14	15	3.4e-06	0.00029	22.0	0.7	1	23	974	996	974	996	0.98
15	15	0.0008	0.07	14.5	6.5	1	23	1002	1025	1002	1025	0.98

Sequence Information

Coding Sequence: atgaatataaatatggATGTCGACCCGTTAAGTACCTATGAGTACCCATACGACTACAACGCACACCCAAACCCCTATGCCAACGTTCAACCAGTCAAGCAAGAACAACCCATGATCAACAATGCATTCTTTCATCATTTCATGGATACCTCATACAGAAATAACGAAAAACAATATCCTATTCCTTATCCAAACCAACAATATCAAGAAAAACAGTATACAAATCTTCATGCTGTCAGAAACATAAATAACGGAAATGTTAATAATGAAAATAGTAATAACGATGTGCAAAATCCTGCACACGAACCAAAAGAAGAGGATGTCAAACCGTTTATAAATCCAAAGAATATTAAAAAGGAGAAGGGGAGGAAAAGCAGCTACTTTTCAGAGAAAATTTTGGATAAAGATTTCAAGTTTTTTGGCTGTTCAGTTTGCGACATCAGTTTTGCACTACAAGGCGAGTTAGACCAACATGTAACTATACATAAGGATAGAATAACTAGCTATGACTTGAAAATCAAGAATCAGAAAAAGAGAAAAAGCATAAAAAAGGaacagaaaaagaagaaaaagttacaaaaagaTGGAAAAGATGTAAAAGTTGAGGGTAAAAATGACAATCTAATTGTTATAGAAATCAAACCAGAAGACGGTTACATAGGTAACGAGAAAGCTTCAgaatttaatgaaaataaagaaGACGGTTACATAGGTAACGAGAAAGCTTTAgaatttaatgaaaataatgtAAACAGAAATGCAAATAACGAAAATGGTTCTACAAATAACGGAAATATTCCTAACGTAGATGGTTCTACAAATAACGGAATCATTCCTAACGTAGATAGTTCTACAAATAACGAAAACATTCCTACCGTAGATAACGATTCTAAAACAGATGTAAAAGAGAAAATTGAGGAGAATTTAGAGATTGCAAAAGCAGCAATAGCTAAAGAACAAACAGATGCAGAGAAAAACAATTTAGAAAGGATATACAAATGCTTTGCTTGCAAGAAACAGTTTtcgttgagttattatttgAAACTACATGTCAGATCACATACAGACGAGAAACCCTACATATGCAGTGTTTGCGGGCAGTCCTTCATCACAGCGAGCAAACTCGGGAGGCACAACAAGCGTATGCACCTCTCCGTGCGGTACCAGTGTCGCATTTGCTACAGATTCTTCTCCAAATTCGAATGTCTGACTCGACATTTCGACAAAAAGCATCCGGACGATAAGTTGGAAGGTGAACCTTACGacTACAACGCCATCTTGCCGTACCTAAAAGAACTAGAAGAGcaattaaaagaaaaagcagaagAGACTAAGACAAAAGCCGAAGATCCATGGGACGGCTGGCCCGCGCCCATAGATCTTCCGTACATGGATAACGGGCACACCAGCGACAAACCAGAGGAGGTCCTCGTGCCGGCTGAACTGGATCAGAAGCCTGTTGAGGTGTTGGTGGAAGGAGACATGCCTCATTTTATGATTAAAAAGGAAGCAGAAGAGGAACCGTACCCAGAATTCGCGGCAGTGAAGGACAGCGATAGTCTAAAGAGCGAGAAGGAAGATGCCGCTGACTTGAACCACTTTGATGACGGGTTTAGGGACGATGACGAAAAAGATGACAGTTTTAAGGAGGAGGCGAAAGATGACAGTCTGAGGGACGTGAAAGATGACAGTTTTAAGAATGAGGACGGGAAcaTATCAGACGACAACTACTTCCCCACCGGCACGTGGGTGCCCCCCACCCCAAAAGTGGAAGGGGACGACAAGCCGAATCGCAGGAAAAAGTCCGACCCCCCCCTAAAATGTGACATTTGCAACAAGAAAATCAGCACAATAACATACATGAGGATTCATATGCGGACGCACACTGGGGAGAAGCCATTTAAGTGCTATATATGTAATAGAGGCTTCATAACGTCCAGTAAGCTACATAGACATGTTTTGACGCACGCTGAGGCCTGGGAAGGGGATTTGGataccCAAGTTAAGGAAGAAGACGAAACAGACATAAAGGAGGAGGCGGAAGGTTCAGAGGAatcgaagaagaagaagaacaagaaaacagacaaaaaGAACCGAGTTAAACGTGCCAAAGCGCAATTCGCGGCGAAGATCAAAGGCGAGGCGAAGAAGACCAGAAGATGGCAGCACACGTGCCAGTTCTGTCATCGGAAGTTCCTGCACGCGGAGACGTTACAGGTCCACAAAAAGAGCCACGAAGGCGAAGAACTAGTGTACAAGTGCCACTACTGCCTCGAGCCCCAGCCCGACGAGGCCACGCTGGCCCAACATGAGACTACACACACGGGGCCCTCGCCCTACGAGTGCGTGGAGTGCGGGAAGAAATACAGGAAGAGGGAAGCCATGATATACCACAAGAAGCAGCACTCCTCCGACAAAATGTTCTACTGCGAGGTGTGTCTGAAGTCATTCACCGCGCAGTGCAAGCTGCAGCGACATCTTCTCAGCCACAACGAGAAGAAGTTCGTTCTGAGATACGAATGCCCAGTATGCGCGCATATGTTCCACACCAAGTACCACATACAGATGCATCTTTCTACGCATCAGAAGGAAGGGCTAATACAAGAAGAAAATCGAAACGACATTCTAGCAATGGTGCTCCAGAACGCCCGGAAGTTCCCCAAACAGACAGACACGCAAACAAACCTCACAGACGTCATACCCAACGACGACCGATCACGTATCTGCAACATCTGCGGGGAAATCTTCCAACACTTCTACTATTTGGAAGAACACCTCAAGAGCCACGGATCAAGGATTGCCCTAGAAGACCTTAACAGTGAAGAAGAGAAAAAACATATATGCAATATATGCAACAAGGGCTTTAAATTACACTACTATTTAAAACTTCACAGCTTCACGCACACGAAGGAGAAGCCGTTTATTTGCCAGCAGTGCGGTAAAGGTTTTATCACACGTGGGAAGTTGAAGAGGCATTTAGAAACGCACACGGGAATAAAGAAGTATCAATGTCATATTTGTTGTAAGTTTTTCACTAGAACCAGTTATTTGAGGATACATGTGAGGACTATACACGGGACGCAGGATTATAATTTTAGATTGGGGAAGGAGTATGGGAATGGGGAGGGGATGGATGTGTATTGA
Protein Sequence: MNINMDVDPLSTYEYPYDYNAHPNPYANVQPVKQEQPMINNAFFHHFMDTSYRNNEKQYPIPYPNQQYQEKQYTNLHAVRNINNGNVNNENSNNDVQNPAHEPKEEDVKPFINPKNIKKEKGRKSSYFSEKILDKDFKFFGCSVCDISFALQGELDQHVTIHKDRITSYDLKIKNQKKRKSIKKEQKKKKKLQKDGKDVKVEGKNDNLIVIEIKPEDGYIGNEKASEFNENKEDGYIGNEKALEFNENNVNRNANNENGSTNNGNIPNVDGSTNNGIIPNVDSSTNNENIPTVDNDSKTDVKEKIEENLEIAKAAIAKEQTDAEKNNLERIYKCFACKKQFSLSYYLKLHVRSHTDEKPYICSVCGQSFITASKLGRHNKRMHLSVRYQCRICYRFFSKFECLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLKEKAEETKTKAEDPWDGWPAPIDLPYMDNGHTSDKPEEVLVPAELDQKPVEVLVEGDMPHFMIKKEAEEEPYPEFAAVKDSDSLKSEKEDAADLNHFDDGFRDDDEKDDSFKEEAKDDSLRDVKDDSFKNEDGNISDDNYFPTGTWVPPTPKVEGDDKPNRRKKSDPPLKCDICNKKISTITYMRIHMRTHTGEKPFKCYICNRGFITSSKLHRHVLTHAEAWEGDLDTQVKEEDETDIKEEAEGSEESKKKKNKKTDKKNRVKRAKAQFAAKIKGEAKKTRRWQHTCQFCHRKFLHAETLQVHKKSHEGEELVYKCHYCLEPQPDEATLAQHETTHTGPSPYECVECGKKYRKREAMIYHKKQHSSDKMFYCEVCLKSFTAQCKLQRHLLSHNEKKFVLRYECPVCAHMFHTKYHIQMHLSTHQKEGLIQEENRNDILAMVLQNARKFPKQTDTQTNLTDVIPNDDRSRICNICGEIFQHFYYLEEHLKSHGSRIALEDLNSEEEKKHICNICNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGIKKYQCHICCKFFTRTSYLRIHVRTIHGTQDYNFRLGKEYGNGEGMDVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00012269;
90% Identity: -
80% Identity: -