Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756215.1:12551300-12560947[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.61 54 5.4 0.1 2 23 192 214 191 214 0.92

2 14 8.9 7.7e+02 1.8 0.3 5 23 223 241 221 241 0.93

3 14 0.19 16 7.1 0.0 2 23 274 296 273 296 0.92

4 14 1.3 1.2e+02 4.4 0.3 5 23 306 324 303 324 0.91

5 14 4.7e-05 0.0041 18.4 2.2 1 23 357 380 357 380 0.96

6 14 1.1 94 4.7 0.2 5 23 389 407 388 407 0.94

7 14 0.0015 0.13 13.6 2.3 1 23 413 435 413 435 0.97

8 14 1.3e-05 0.0011 20.1 2.1 1 23 443 465 443 465 0.97

9 14 2e-05 0.0017 19.6 0.4 1 23 474 497 474 497 0.98

10 14 0.00031 0.027 15.8 0.2 1 23 503 525 503 525 0.97

11 14 1.7e-05 0.0014 19.8 5.4 1 23 531 553 531 553 0.98

12 14 0.00033 0.029 15.7 0.6 1 23 558 580 558 580 0.98

13 14 0.00032 0.028 15.8 6.4 1 23 586 608 586 608 0.97

14 14 0.00022 0.019 16.3 2.3 2 23 615 637 614 637 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.61	54	5.4	0.1	2	23	192	214	191	214	0.92
2	14	8.9	7.7e+02	1.8	0.3	5	23	223	241	221	241	0.93
3	14	0.19	16	7.1	0.0	2	23	274	296	273	296	0.92
4	14	1.3	1.2e+02	4.4	0.3	5	23	306	324	303	324	0.91
5	14	4.7e-05	0.0041	18.4	2.2	1	23	357	380	357	380	0.96
6	14	1.1	94	4.7	0.2	5	23	389	407	388	407	0.94
7	14	0.0015	0.13	13.6	2.3	1	23	413	435	413	435	0.97
8	14	1.3e-05	0.0011	20.1	2.1	1	23	443	465	443	465	0.97
9	14	2e-05	0.0017	19.6	0.4	1	23	474	497	474	497	0.98
10	14	0.00031	0.027	15.8	0.2	1	23	503	525	503	525	0.97
11	14	1.7e-05	0.0014	19.8	5.4	1	23	531	553	531	553	0.98
12	14	0.00033	0.029	15.7	0.6	1	23	558	580	558	580	0.98
13	14	0.00032	0.028	15.8	6.4	1	23	586	608	586	608	0.97
14	14	0.00022	0.019	16.3	2.3	2	23	615	637	614	637	0.96

Sequence Information

Coding Sequence: ATGAGTGTGAAAGACTTATGTAGACTTTGTGCAAAAAAGGAAGAATTATCAAAGGACTTATTGGATAGTAACAACAAAAATGTGTTGAAGTTGATACAAGATCTAAtacaaattaatATTACCGAAAATGataacttacctactaacgtCTGTTTGAATTGTGAAGAGAGGATAGTATCATTTCAACTATTCATTTTAGAATGCTATAAAGTTCAagaaaactttaagaaaatatgTGCTGAAAAAGTTTCTGTTAAGATTGAACAAGAAATCCTTGATCTTGGACATTCAATCATAAAATCAGAGGTAAAAGATGAATTAAGTGCAGAGGATATTGTTTTATGTACTATCAACAATGATACTTCTATGTCAGAATATGAAGGCGGGGACTTTGATAATTTTGATGATAAATTAGATGCTGACAattctgatgaagatgatgatgggGACGATGTCACACTGGCTGAGCTTAGAAAAGAAAAGGTTGAGGAGAAAACGACTTCTCAAGAGATGACCAAACTCAAACAACTTCTAAAGAAGCCTAACTTGAAAATAAAAGACTTAGTGAAaaTGCAGTGTGATATGTGCAGTTTCAAAGGAAAATCTTGGGATGTGTTGCAAGAGCACTACTCAGGAATACACCAAGGCCAACTCACTGTCAATTGCATATGTGGATTCAGTATCAAATCAAAAAGTATTTTGTACAAACATGTGCTGGAACACAGAATGGAGAGTGAAAAATTGATCAATAAATCTGGAGATAATTTGCAAACTGATTTAAATTATTGTGATCTCAAAGCAAAGCATTTTGTGAAaATGATGTGCAATATATGTGGGGAAAAAGCAAAAACATGGGCAATATTACAGGATCATTACACAATAATTCACCAAAGTAAAGTGGTTGTATCATGTATACTGTGTGGCTTTAGCATCAAGTCTAAAAGCGTATTGTATAAGCATGTGTTGGAACATAAAATGGAAAGTGaggctttaaataaaaaagagagaGAAATTGAAAAACAAATTGATACAGATTATTGTAACCTGAAAGTTAAAGATTTCATTGATTTTTCATGCAATAATTGCAATAGAAAATATTCAAGCTGGTACAGTTTGAAATCGCATACTTTGTCTATGCACAAGACACAGCCTATGGTCCGATGCATATGTGGTATTTCTCTCACATCGAAAACAGTTTTATACAAACATGTTCAGGACCACAAAAATCCGAATTCATTCTGTTGTGATAAATGTCCAAGAATAACGAAAACACTCGAGGCtctaaataaacacaaaatgaTGCATCTACCGAAGGCTGACAGAAAGTATTTCTGCAATTCttgtgacaaaatatttaatactaagGACAGTTTGAAATCGCATGAAAGATCACACATACCTATTGAAGAAAGAAAGATTTACCGCTGTCCAATATGTGATATGAAATTCACAACTCGGTCATCAGCGGCGTCCCACAAGCGCGTCGTGCACGACAAGATCAAAAGCTACGTGTGCGACCTGTGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGGCAGCACCGCGCCATCCACAGCGACGACAAGCCTTTTGTGTGCAGAAAATGCTATAAATCCTTCAAGACGCATTCTAATCTGTCGACGCACATGGACACGCACGAAGAGACGTCGTACACTTGCGGCGTTTGCAGCCGCGTGCTCAACAGCCGGCGCACGCTGCGCAAGCACCTGCTGGTGCACGAGGAACGCTGCAAGCACGTCTGCTCTTTCTGTCACAAGGCGTTCAAGAGGAGACAGACCTTGAAGGTTCATCTGTATACACACACGGGAGACAAGCCTCTGACCTGCAAGTGGTGCGACGAGCGATTCGCGTACGCGTCCACGCTGCGCTCGCATCGCATGCGCTGCCACCCGGACAAGATGCCCTCACAAACCCAACATCAACAGACCGCCGCCTACCGACAATACGCGCACGTTCCTGCGGAGGATTATATCAAGAGCGACTTGGCAGCTATCGGGTTAGACAAGAATCCCACAGAgactatgtaa
Protein Sequence: MSVKDLCRLCAKKEELSKDLLDSNNKNVLKLIQDLIQINITENDNLPTNVCLNCEERIVSFQLFILECYKVQENFKKICAEKVSVKIEQEILDLGHSIIKSEVKDELSAEDIVLCTINNDTSMSEYEGGDFDNFDDKLDADNSDEDDDGDDVTLAELRKEKVEEKTTSQEMTKLKQLLKKPNLKIKDLVKMQCDMCSFKGKSWDVLQEHYSGIHQGQLTVNCICGFSIKSKSILYKHVLEHRMESEKLINKSGDNLQTDLNYCDLKAKHFVKMMCNICGEKAKTWAILQDHYTIIHQSKVVVSCILCGFSIKSKSVLYKHVLEHKMESEALNKKEREIEKQIDTDYCNLKVKDFIDFSCNNCNRKYSSWYSLKSHTLSMHKTQPMVRCICGISLTSKTVLYKHVQDHKNPNSFCCDKCPRITKTLEALNKHKMMHLPKADRKYFCNSCDKIFNTKDSLKSHERSHIPIEERKIYRCPICDMKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCYKSFKTHSNLSTHMDTHEETSYTCGVCSRVLNSRRTLRKHLLVHEERCKHVCSFCHKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRMRCHPDKMPSQTQHQQTAAYRQYAHVPAEDYIKSDLAAIGLDKNPTETM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01302636;
90% Identity: iTF_00012259;
80% Identity: -