Basic Information

Insect: Acrobasis repandana
Gene Symbol: Zfa
Assembly: GCA_963576875.1
Location: OY756239.1:11593052-11612897[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00024 0.021 16.2 2.2 1 23 244 266 244 266 0.99

2 11 0.0033 0.28 12.6 0.9 1 23 273 295 273 295 0.98

3 11 3.9 3.4e+02 2.9 0.7 1 9 299 307 299 319 0.90

4 11 8.5e-05 0.0074 17.6 4.6 1 23 329 352 329 352 0.92

5 11 0.005 0.43 12.0 0.3 3 23 360 381 359 381 0.97

6 11 7e-06 0.00061 21.0 0.1 1 23 394 416 394 416 0.97

7 11 8.3e-05 0.0072 17.6 1.3 1 22 422 443 422 447 0.92

8 11 3.3e-05 0.0029 18.9 4.3 1 23 455 478 455 478 0.97

9 11 0.0012 0.11 14.0 0.1 1 23 484 507 484 507 0.96

10 11 1.1e-05 0.00099 20.3 0.2 1 23 516 538 516 538 0.98

11 11 0.0011 0.099 14.0 0.2 1 23 544 567 544 567 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00024	0.021	16.2	2.2	1	23	244	266	244	266	0.99
2	11	0.0033	0.28	12.6	0.9	1	23	273	295	273	295	0.98
3	11	3.9	3.4e+02	2.9	0.7	1	9	299	307	299	319	0.90
4	11	8.5e-05	0.0074	17.6	4.6	1	23	329	352	329	352	0.92
5	11	0.005	0.43	12.0	0.3	3	23	360	381	359	381	0.97
6	11	7e-06	0.00061	21.0	0.1	1	23	394	416	394	416	0.97
7	11	8.3e-05	0.0072	17.6	1.3	1	22	422	443	422	447	0.92
8	11	3.3e-05	0.0029	18.9	4.3	1	23	455	478	455	478	0.97
9	11	0.0012	0.11	14.0	0.1	1	23	484	507	484	507	0.96
10	11	1.1e-05	0.00099	20.3	0.2	1	23	516	538	516	538	0.98
11	11	0.0011	0.099	14.0	0.2	1	23	544	567	544	567	0.94

Sequence Information

Coding Sequence: ATGGCGGACCAGTCTAAAACTAAAAATCTGTGCTGTCTGGGCTGTCTGGCCAATAGTAAGGACCTCCAGTTGGAAATGATCACCTTACAAAATGAAACTTTAAAATCTATATTACAGatgGAGGAAGTTTGCCTCTGTTATTTATGCAAGAGGATGGCTCAACACGTGGAGCTGTTTGTACAGAATGTTCAGAGCAATCAGATACTGCTGGAGAATTTCAgtattGACACAGATTCAACCTTCCAAATAGTTCGCTCCCAAACCGAACCTCTGATCAGCCTGACCCACCTGCCGTTAGACATCATAGAGCTGACTGGCACAGACCTGGTGAACGGAGAAGAATGCTTCTCCACAGTGCACAGTTCCAAGAAGGATGTAAAGATCAAACTTGAACCtttaaaggaagaagaagaattactgGACCATTTGGAGGGAGAGTTTGTTGATGATGATTCAGatTTCCAGGCTCGATTTGTTAAAGAAGAAGGGGATGACTACCCTTTGAAAGAGTTATTCAAAGAAGAACTAGAAAACAGCATGCGTTCCAAACGTAGAAAGAGATCGTTTAAGAAATTGAAGatcaaaaaaaagaaagtgaAAAGAGAGGATGATGGCGAAATTTTACAGAAAGATCTGTCTACAGTGAAACAAATCTTCATAACAAGAGAACAGTGCATGAGAGAGAGGGAGATAAAGCTGCAAACAGACAAGAAGTATCTTAACGCCATATACAAATGTACGGACTGTATAAAAGGATTCACGTTTAAAGCGAGCTATAACAAACACATGGAAAAACATAGCGAGAGTATGGGCGACTATGAATGTGACATTTGTAAGCAAAGAACGAATACAGAGGAAAAACTGTTAGCACATAAGAAGTATCACGAAATtcGCTACCAATGTACTGAATGTGACCACACTAGAGTATGCAGGGCTACTATAATAGACCACTATGCTGCGTTCCACTGTTTGGACTTCTTACAACACATATGCTCTTATTGCTCTAAGCAGTTCAAGCGCAAAGCATCTTTGAGAAAACACATCTTTAACCGACATAGACAGAAAGAGAGGGTGTTGTGTGTGTACTGCAGTAAAACTTACGCCAGTATGGAGGTGCTCAAGTCGCATATGATCACGAGACATCCCAACGAAGTATCAGCCGAGAAAAGAAGCAAGAAGTTCGTGTGCCAAGAGTGCGGCATGGCGTTCGGCTCGCCCTCGCAGCTCAAGAAGCACGGACTGAAGCATTCCGACGTCAGGGAGCATTACTGCGTGGAGTGTGACAAGAGTTTCAAGACTGAAGACACATTAAAATATCACCTGACAACAACGGCCATTCACGTAAACTATACAGAGTTACGGTATCCATGCCTGCACTGTGACAAACGTTTTGGAACTAAACGCAACCTTGAACACCACACGAATAGGATCCATTTGAAAGTCAAACCATTTCCTTGTGATAGTTGTGATAAGGCCTACGTAAGCAACTGGGCACTGTCAGAACACAAGCGTCTTATCCACGAGGGGTACAAGAGACCTCTAAGGTTCCCCTGCCCGATGTGTGACCGCGTTtttgatCGCAACCAAATCCTCAAAGCGCATCTGCGCACCCACACCGGCGAACGACCGTACCAATGCTCAAAATGTCCGGCCTCTTTCGGACAATCTAGCGCTTTAGGAACGCACAATAAATTGATACATCTTAGGCTCACGAGGGATGGGAAACCCAAAGCTAGCGTCAAGTAG
Protein Sequence: MADQSKTKNLCCLGCLANSKDLQLEMITLQNETLKSILQMEEVCLCYLCKRMAQHVELFVQNVQSNQILLENFSIDTDSTFQIVRSQTEPLISLTHLPLDIIELTGTDLVNGEECFSTVHSSKKDVKIKLEPLKEEEELLDHLEGEFVDDDSDFQARFVKEEGDDYPLKELFKEELENSMRSKRRKRSFKKLKIKKKKVKREDDGEILQKDLSTVKQIFITREQCMREREIKLQTDKKYLNAIYKCTDCIKGFTFKASYNKHMEKHSESMGDYECDICKQRTNTEEKLLAHKKYHEIRYQCTECDHTRVCRATIIDHYAAFHCLDFLQHICSYCSKQFKRKASLRKHIFNRHRQKERVLCVYCSKTYASMEVLKSHMITRHPNEVSAEKRSKKFVCQECGMAFGSPSQLKKHGLKHSDVREHYCVECDKSFKTEDTLKYHLTTTAIHVNYTELRYPCLHCDKRFGTKRNLEHHTNRIHLKVKPFPCDSCDKAYVSNWALSEHKRLIHEGYKRPLRFPCPMCDRVFDRNQILKAHLRTHTGERPYQCSKCPASFGQSSALGTHNKLIHLRLTRDGKPKASVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00012270;
90% Identity: iTF_00012270;
80% Identity: -