Arep008287.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756220.1:19880566-19889039[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-08 8.1e-06 26.4 0.0 1 37 88 124 88 130 0.95 2 2 3 8.5e+02 0.7 0.0 15 24 202 211 200 212 0.80
Sequence Information
- Coding Sequence
- ATGTGCAAAGGTTTACTGCCTGCGTCTAAAATTCGTTTAAAGCGCGTTAGTGCGCGTCACATGCGCGTTAAAAATGCGCTGTGTGCATACACTCCAAAATCAGCTCTTAGTCCTGTCACATCGTTGGAGTGTTATTTCGGAAAGCCCTTATTTCTGGTCGAGCTGatGTTTCTGCTGAAGCTCAGGGAGAATTCACTGGAAGAAAACGAGAACAAGGAGGTTATGGCGCGGTACAAATCCAGAGGTATACGAGGCAAATGGACCGAAGACAACATGATAAAAGCGTTAGCGGCGGTAAAACACGGCGTGATGAAAGTTTATACTGCCTCAAAACATTTTGATATACCGAGACGTACACTCAAGAGATATCTTACTGATAATAAGAAAGAAAAGTCATCCCTAGGAAGAAAAACATTACTCAGTAAAGAGCAAGAAAATGACCTCGAAGCTCGGATCTTGCGCTTGTGTAATGTTGGGTATCCCCTCACTCCACGTGTATTAAGGACCAGTGTTAAGACCTTCTGCAACATGAACAACATACCCGTATCAAGCAACAGTGCTATGATTGGCCGTGATTGGCTGAGGGGTTTCCTCAAACGTCATAAAGGCTTGAGCCAAAGAAAAGCACAAAATCTTAACCCAGCAAGAGCTCAAAAGCTCAACAAAATAGTAGTGGctgattattttgaaaaactccGTAAGGTCTTGGAAGACAACGATTTACTGAATAGCCCAGAAAGAATATTTAACATTGATGAGAAAGGGTGTCAGTTAAATCTCCATAAAGCTCCTCAAGTTTTAGCTCAACGAGGTGCAAAGAGGGTGCATTTAGTAGCCCACGAACATGCTGAGAACGTAACAGTAGTATCGTGTGGCAATGCTTTGGGTCAAGCTATTCCGCCCATGATACTATTTAAAGGAAAGCGGATGAAACCGGAGTGGAAAGACTCATTACCAAACGGAACAAATGTCCAAATGACTCCCAAAGGTAGTATGAACATTGCTACTTTTGTTGAATGGATACACCATCTAGCCAAATACAAACTTCCTGGACCATGTGTCGTGCTGTTTGATGGAGCAAAATGTCACCTTGATTACTCCATCGTAGAAGCTGCTGATAAATTTGAGATAAAGCTATTCTGCCTGCCCAGTAACACGACCCACGAACTCCAACCAATGGACAAGTCAGTGTTTCGCTCATTTGAGTACTTCTGGGATGAGGAAGTGTTGAAGTATTGGGCGCATCACGAAGATAGAAGAATCACAAAACACAGATTCGGTCTCATATTTTCAAAGGTATGGGACAAAGCAATGACGCCCACTAACATCAAAGCTGGTTTTGAAGCGACGGGAATATATCCGTTTGACCCGAATAAAATTCCTGAAGAAGCTTACGCGCCAAGTATTCCTACTCATGTATCGATTCCTGAAGAATCTGTCAATCCAGCAACAAAAGATTCCAGTGACAGCGAAGATGATATACCACTGGCAGCGTTTGTTTCTTCAATAAATAGAGATTCTACCACGTCTTGTTCATCTGGATCTGTAGGCAAAACACAAAGCCCTTCAGTCCTGACAGAGGAAGATCAACTCCCAATCCCTAGTTCCTCTCAGTGTACGGCTACTAAAAATTTGTCTCCCGAAGATGTTTATGATTTTGCAGGATTTCGTGAAGCTGCTTCTTCAAATAAAAAGACGACAGATACCGAATCATCTCCTTCTGAGAATATAAATGTTTCAGGCCAACTCTTGTTATCGTCTAAGGACAGACAAATTCAGACTGCAAGTCCATCTCTTTTAGATAACGTTTTATTTGAGGCTTCAACTTCATTGCCTGCTAAAGATTTAACCCCAGTCAAGGTTTCTGATATGGCTATAGAAAGTTCAGCTCCGTTAGCTGCTACATACTCAACTCCAGTTAAggattttaatataggtatagaAGACTCAGCTTTGCTAGCTGCTAAATATTCATCTCCAGTTAAGCATTATAGGGATATTGAGGCTTCAGCTCCTTTGATTACCAAATCTTCAACTCAAGATTGTAACGACAAGACTGTGGAGACTCTAGTACCAATGCCATCAACTTCATCAGGCTCTAACATATCATTCAAAATGATGTTCAAAACTCCACAGAAAGTTTCAAGTCCAGTTGTAACAAGAAAAAAGGCTATTAACAGCCTAGCACAAGTATTaactaaagatatttttgataacaaagaaaatagaattaaaattactaataaGCAGAAGGTGACAGATAAAAACAAAAGCcaagataaaaatatagaaaaagaaGGGTTAAAAAAAGGTAAAGGGAAAGGAAAAGGGAAGGGTAAGGCCATAAAGGAAAGAGCGTCTGAGTCCTGGTATTGTTTTGTATGTCAAGAAGATAAAATTGCTGACATGAGGCTATGCAAAAATTGTGCATCTTACGTCCACGAAGAATGCGTAGGGCTTACTGCTAAAGATAAAGAAGAATATGTTTGTAACCGATGCgaagattaa
- Protein Sequence
- MCKGLLPASKIRLKRVSARHMRVKNALCAYTPKSALSPVTSLECYFGKPLFLVELMFLLKLRENSLEENENKEVMARYKSRGIRGKWTEDNMIKALAAVKHGVMKVYTASKHFDIPRRTLKRYLTDNKKEKSSLGRKTLLSKEQENDLEARILRLCNVGYPLTPRVLRTSVKTFCNMNNIPVSSNSAMIGRDWLRGFLKRHKGLSQRKAQNLNPARAQKLNKIVVADYFEKLRKVLEDNDLLNSPERIFNIDEKGCQLNLHKAPQVLAQRGAKRVHLVAHEHAENVTVVSCGNALGQAIPPMILFKGKRMKPEWKDSLPNGTNVQMTPKGSMNIATFVEWIHHLAKYKLPGPCVVLFDGAKCHLDYSIVEAADKFEIKLFCLPSNTTHELQPMDKSVFRSFEYFWDEEVLKYWAHHEDRRITKHRFGLIFSKVWDKAMTPTNIKAGFEATGIYPFDPNKIPEEAYAPSIPTHVSIPEESVNPATKDSSDSEDDIPLAAFVSSINRDSTTSCSSGSVGKTQSPSVLTEEDQLPIPSSSQCTATKNLSPEDVYDFAGFREAASSNKKTTDTESSPSENINVSGQLLLSSKDRQIQTASPSLLDNVLFEASTSLPAKDLTPVKVSDMAIESSAPLAATYSTPVKDFNIGIEDSALLAAKYSSPVKHYRDIEASAPLITKSSTQDCNDKTVETLVPMPSTSSGSNISFKMMFKTPQKVSSPVVTRKKAINSLAQVLTKDIFDNKENRIKITNKQKVTDKNKSQDKNIEKEGLKKGKGKGKGKGKAIKERASESWYCFVCQEDKIADMRLCKNCASYVHEECVGLTAKDKEEYVCNRCED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012914;
- 90% Identity
- iTF_00012922;
- 80% Identity
- -