Arep006815.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Acrobasis repandana
Gene Symbol
-
Assembly
GCA_963576875.1
Location
OY756219.1:11692773-11697411[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.7e-08 7.8e-06 26.4 0.0 1 37 61 97 61 103 0.95
2 2 2.9 8.3e+02 0.7 0.0 15 24 175 184 173 185 0.80

Sequence Information

Coding Sequence
ATGTGCTGTAAGTACACTGAGGATATGAATGACGTTGCTGCGGGCTTCACTGACGGCACTATCCGATTATTCAACTGCAATACTGGAGACTGCAGTCATACGCTGGTGGACGACGAGTGCAGGGCGTACCCTGGTCCGGTTATGGCGCGGTACAAATCCAGAGGTATACGAGGCAAATGGACCGAAGACAACATGATAAAAGCGTTAGCGGCGGTAAAACACGGCGTGATGAAAGTTTATACTGCCTCAAAACATTTTGATATACCGAGACGTACACTCAAGAGATATCTTACTGATAATAAGAAAGAAAAGTCATCCCTAGGAAGAAAAACATTACTCAGTAAAGAGCAAGAAAATGACCTCGAAGCTCGGATCTTGCGCTTGTGTAATGTTGGGTATCCCCTCACTCCACGTGTATTAAGGACCAGTGTTAAGACCTTCTGCAACATGAACAACATACCCGTATCAAGCAACAGTGCTATGATTGGCCGTGATTGGCTGAGGGGTTTCCTCAAACGTCATAAAGGCTTGAGCCAAAGAAAAGCACAAAATCTTAACCCAGCAAGAGCTCAAAAGCTCAACAAAATAGTAGTGGctgattattttgaaaaactccGTAAGGTCTTGGAAGACAACGATTTACTGAATAGCCCAGAAAGAATATTTAACATTGATGAGAAAGGGTGTCAGTTAAATCTCCATAAAGCTCCTCAAGTTTTAGCTCAACGAGGTGCAAAGAGGGTGCATTTAGTAGCCCACGAACATGCTGAGAACGTAACAGTAGTATCGTGTGGCAATGCTTTGGGTCAAGCTATTCCGCCCATGATACTATTTAAAGGAAAGCGGATGAAACCGGAGTGGAAAGACTCATTACCAAACGGAACAAATGTCCAAATGACTCCCAAAGGTAGTATGAACATTGCTACTTTTGTTGAATGGATACACCATCTAGCCAAATACAAACTTCCTGGACCATGTGTCGTGCTGTTTGATGGAGCAAAATGTCACCTTGATTACTCCATCGTAGAAGCTGCTGATAAATTTGAGATAAAGCTATTCTGCCTGCCCAGTAACACGACCCACGAACTCCAACCAATGGACAAGTCAGTGTTTCGCTCATTTGAGTACTTCTGGGATGAGGAAGTGTTGAAGTATTGGGCGCATCACGAAGATAGAAGAATCACAAAACACAGATTCGGTCTCATATTTTCAAAGGTATGGGACAAAGCAATGACGCCCGCTAACATCAAAGCTGGTTTTGAAGCGACGGGAATATATCCGTTTGACCCGAATAAAATTCCTGAAGAAGCTTACGCGCCAAGTATTCCTACTCATGTATCGATTCCTGAAGAATCTGTCAATCCAGCAACAAAAGATTCCAGTGACAGCGAAGATGATATACCACTGGCAGCGTTTGTTTCTTCAATAAATAGAGATTCTACCACGTCTTGTTCATCTGGATCTGTAGGCAAAACACAAAGCCCTTCAGTCCTGACAGAGGAAGATCAACTCCCAATCCCTAGTTCCTCTCAGTGTACGGCTACTAAAAATTTGTCTCCCGAAGATAAGACTGTTTATGATTTTGCAGGATTTCGTGAAGCTGCTTCTTCAAATAAAAAGACGACAGATACCGAATCATCTTCTTCTGAGAATATAAATGTTTCAGGCCAACTCTTGTTATCGTCTAAGGACAGACAAATTCAGACTGCAAGTCCATCTCTTTTAGATAACGTTTTATTTGAGGCTTCAACTTCATTGCCTGCTAAAGATTTAACCCCAGTCAAGGTTTCTGATATGGCTATAGAAAGTTCAGCTCCGTTAGCTGCTACATACTCAACTCCAGTTAAggattttaatataggtatagaAGACTCAGCTTTGCTAGCTGCTAAATATTCATCTCCAGTTAAGCATTATAGGGATATTGAGGCTTCAGCTCCTTTGATTACCAAATCTTCAACTCAAGATTGTAACGACAAGACTGTGGAGACTCTAGTACCAATGCCATCAACTTCATCAGGCTCTAACATATCATTCAAAATGATGTTCAAAACTCCACAGAAAGTTTCAAGTCCAGTTGTAACAAGAAAAAAGGCTATTAACAGCCTAGCACAAGTATTaactaaagatatttttgataacaaagaaaatagaattaaaattactaataaGCAGAAGGTGACAGATAAAAACAAAAGCcaagataaaaatatagaaaaagaaGGGTTAAAAAAAGGTAAAGGGAAAGGAAAAGGGAAGGGTAAGGCCATAAAGGAAAGAGCGTCTGAGTCCTGGTATTGTTTTGTATGTCAAGAAGATAAAATTGCTGACATGAGGCTATGCAAAAATTGTGCATCTTACGTCCACGAAGAATGCGTAGGGCTTACTGCTAAAGATAAAGAAGAATATGTTTGTAACCGATGCgaagattaa
Protein Sequence
MCCKYTEDMNDVAAGFTDGTIRLFNCNTGDCSHTLVDDECRAYPGPVMARYKSRGIRGKWTEDNMIKALAAVKHGVMKVYTASKHFDIPRRTLKRYLTDNKKEKSSLGRKTLLSKEQENDLEARILRLCNVGYPLTPRVLRTSVKTFCNMNNIPVSSNSAMIGRDWLRGFLKRHKGLSQRKAQNLNPARAQKLNKIVVADYFEKLRKVLEDNDLLNSPERIFNIDEKGCQLNLHKAPQVLAQRGAKRVHLVAHEHAENVTVVSCGNALGQAIPPMILFKGKRMKPEWKDSLPNGTNVQMTPKGSMNIATFVEWIHHLAKYKLPGPCVVLFDGAKCHLDYSIVEAADKFEIKLFCLPSNTTHELQPMDKSVFRSFEYFWDEEVLKYWAHHEDRRITKHRFGLIFSKVWDKAMTPANIKAGFEATGIYPFDPNKIPEEAYAPSIPTHVSIPEESVNPATKDSSDSEDDIPLAAFVSSINRDSTTSCSSGSVGKTQSPSVLTEEDQLPIPSSSQCTATKNLSPEDKTVYDFAGFREAASSNKKTTDTESSSSENINVSGQLLLSSKDRQIQTASPSLLDNVLFEASTSLPAKDLTPVKVSDMAIESSAPLAATYSTPVKDFNIGIEDSALLAAKYSSPVKHYRDIEASAPLITKSSTQDCNDKTVETLVPMPSTSSGSNISFKMMFKTPQKVSSPVVTRKKAINSLAQVLTKDIFDNKENRIKITNKQKVTDKNKSQDKNIEKEGLKKGKGKGKGKGKAIKERASESWYCFVCQEDKIADMRLCKNCASYVHEECVGLTAKDKEEYVCNRCED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00012914;
90% Identity
iTF_00011891; iTF_00012915; iTF_00012916; iTF_00011893; iTF_00012925; iTF_00012914; iTF_00012924;
80% Identity
-