Arep026282.1
Basic Information
- Insect
- Acrobasis repandana
- Gene Symbol
- -
- Assembly
- GCA_963576875.1
- Location
- OY756240.1:3573567-3578415[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 3.9e-07 30.6 0.0 4 34 63 93 60 100 0.92 2 2 9.8e-13 2.8e-10 40.7 0.0 1 37 106 142 106 150 0.93
Sequence Information
- Coding Sequence
- ATGCTATGgccaaatggaaaagaaatacccCAAGCCAAATTAGACGATTTAGAATCAATGTTTGATCTCATTCCAAAAGACTGGCTCGGATTTTACAAGGGTCTTAAAGGGAATCCCAATTTCGTAGACGACATTCAGGGGTCACCCGCCATAAAAAGTCGTGCTCGTGGGAATTGGACATTGGCACAGTTAGAAAATGCCATGGATGCTGTTAAAGGCGGAATGATGTCTCAACGAGAAGCATCCAGAACATACGGTATTCCAAGAAGAACCTTAgaagTGGGGAAGGAAAAAGCTACAGATCCAAGAAAATGGACagaagaaaatatgaaaaaagctaTAGAAGATGTCATAAGCAAGAAAATGGGAGTTAATGAAGCTAGCCGGACATATGAAATACCATCAAGAACCTTACGTAGACACATCCTGAAAGGCTGGGATAGCAAGCAGAATATAGGTAGACCTTCGGAATTAGGACATGAAAATGAATTGAGACTTGTAGCTCACATCAAACGTCTCGAATCCATCGGATTCCCTCTAGAACAATCAAGACTGCAGTCTATTGCTTACGACTTTGCTGAAAAACTAGAATTACCTCATCGATTCAATAAGGAGAAAAAACAAGCTGGATGGGATTGGTTCCAAGGGTTCATGAAGAGGCATCCAGAGCTAAGTAAAAGAAAAGCGGAAGGCCTGTCCCTGGCGAGAGCTACTGGTATGAATCGACAGGatgtcaataattattttgagATGTTGTTGAAAGTGTTGACTGAAAATGATTTAATTGGTAAGCCTGAAAGAATTTTCAACATGGACGAAAGTGGCATTCAAATTAACAATAAAACTGGAATCGTAGTAGCCAGCAAGGGTGCAAAATGTGTTAATTCTGTAACCAGCGCTGAAAAAGGTGAACATATTTCTATAATTGCATGCTGCAATGCTGAGGGCACTTTTCTTCCCCCCGTTTTGATATTTAAaggtaaatacaaaaaacctgAATCATCTTACATCAACGCTGATCTATTCTACAACTGGATGAAAGATCATTTTATTCCACGAAAGTCAGACGGGAAAGTTCTCCTGATTCTTGATGGCCATTCCTCCCATTCGAATTCATATAAAATGCTACAGTTAGCTAAAGAAAACGAAATAATCTTGCTTTGTCTACCTAGCCACACTACTCAGGCTCTACAACCCTTAGACAAAAGTTTTTTCAAGCCTTTTAAAAGCTACCTGTCCAAAGCAGTAACCACTTGGTTTATAAACAACAAAGAAAGGCATTTAAACCGACAGCACATTTCAAAACTAATTGGTGAGGCCTGGTACAAGTCTGCAATTCCAGCAATCGGTGTTTCAGGGTTTAAAGCAACAGGGATATATCCCTATGATCCATACATTGTTCCTGactatttcttcagcgtttctgATGCAGCAGTTAGAAACAGTCCTGAcaatattcaaaatagtgaCCTTTCTTTGCCGAGTACTTCAACATCTTCAATAAATCAGAGTGATCAGATTGCACACGCTTCTGATGCTTTACAGAAAGAAACACCAACTAAGACCTTACAAATAAAACACTTGGTAGCACCAGCAAAACGTAAGAAGAATGTTGCAGAAGTGTCGTCATCATCGGAAAGTGAAGAAGAGTTACAGCTCAGTGAATCAAGTAAAGAATGTTCTGATGAAAATGAAAACACTTGTGTAGAATGTCTCGAATCTTACTtccatacaaagaaaaaaagtgACTGGATCCAGTGTTTGCAGTGTTCCGGCTGGTTGCATGAAGATTGCTCAAACTTCCCAGAGAAATGCAACAAGTGCGGTGACCAAAATAAAGGGAAAGGAAAAGGAAAGAAGACTAAAAAATGA
- Protein Sequence
- MLWPNGKEIPQAKLDDLESMFDLIPKDWLGFYKGLKGNPNFVDDIQGSPAIKSRARGNWTLAQLENAMDAVKGGMMSQREASRTYGIPRRTLEVGKEKATDPRKWTEENMKKAIEDVISKKMGVNEASRTYEIPSRTLRRHILKGWDSKQNIGRPSELGHENELRLVAHIKRLESIGFPLEQSRLQSIAYDFAEKLELPHRFNKEKKQAGWDWFQGFMKRHPELSKRKAEGLSLARATGMNRQDVNNYFEMLLKVLTENDLIGKPERIFNMDESGIQINNKTGIVVASKGAKCVNSVTSAEKGEHISIIACCNAEGTFLPPVLIFKGKYKKPESSYINADLFYNWMKDHFIPRKSDGKVLLILDGHSSHSNSYKMLQLAKENEIILLCLPSHTTQALQPLDKSFFKPFKSYLSKAVTTWFINNKERHLNRQHISKLIGEAWYKSAIPAIGVSGFKATGIYPYDPYIVPDYFFSVSDAAVRNSPDNIQNSDLSLPSTSTSSINQSDQIAHASDALQKETPTKTLQIKHLVAPAKRKKNVAEVSSSSESEEELQLSESSKECSDENENTCVECLESYFHTKKKSDWIQCLQCSGWLHEDCSNFPEKCNKCGDQNKGKGKGKKTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00065339;
- 90% Identity
- -
- 80% Identity
- -