Acon031852.1
Basic Information
- Insect
- Acrobasis consociella
- Gene Symbol
- -
- Assembly
- GCA_963555685.1
- Location
- OY743134.1:8923550-8930288[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.029 1e+03 0.9 0.0 19 30 169 180 164 190 0.83 2 7 0.02 7.1e+02 1.4 0.1 21 45 199 223 191 232 0.75 3 7 0.1 3.6e+03 -0.9 0.1 21 32 255 266 249 282 0.73 4 7 1.1e-05 0.41 11.8 0.1 21 45 283 307 275 310 0.90 5 7 0.00057 20 6.3 0.1 21 46 311 333 306 339 0.76 6 7 0.007 2.5e+02 2.8 0.0 22 48 337 363 331 367 0.83 7 7 2e-05 0.72 11.0 0.1 21 43 364 386 361 390 0.93
Sequence Information
- Coding Sequence
- ATGTCGGAAAGTTGGAAAGGGAACAGCTTGTGCCGCTGCTGCCATGCCGAAGGCAGTTTTAAGGGGTTTGCAGACAGATGTTCTAGTGTAAGCACTGCCGAAATCGTATCGAAAATGTTACGCGATACGTTCAATATTCGCATAACTTCACTACCGGAAGGCCGTCCCTTCGACATCTGTGAGCGCTGTGAGCCGAGGCTGCAAGACGCTTCACTCTTCAAGCAGCAAGTTGTGGCTTGCGAAAGGAAACTCAGGCAGTATTACGCTGGTGCAGAGTGTAAAGATGGTGATATTCTGAACAAAGCTGTGAAAGTAGAAGTAGATGCAGAAGATGCTAAAGATGAATCGCAACAATATGATGAACAAGACAACAAATATAATGAAGACAACAGACTGTCATCCATGGAGATCTTCATCCAACCGATCCTGGATGACGAAGACCAGCCGCTATCCGTTCTGAGGAGTCGCAGACAGTCTGATGATGATTGGGTTCCGGATCATCTGAGCGATGGCGTAAAACCATATACGTGCAAAATTTGCAGCAAGCAATTTTCCAGCAAAAGTTACTTGTCTATCCACGAGCGACAACACACAGGAGAAAAGCCATTCTGCTGCGAAATTTGCAAAAAGAATTTCACTGCTTACACCACGCTGAAAGTTCATATGCGAGTGCACACAGGTTTGAAGCCATATTCGTGCAGTTTTTGCGAGAGGCAGTTCGCTCAAATGGCCAGTTTTAAACTGCACGAACGGACGCATACGGGGGAAAAGCCATATTCGTGCAAAGTGTGCAAAAAGCCATTTTCTGACAACGGATACTTGAAAATCCATATGCGCGTGCATACAGGCGAAAAACCGTATACGTGTGAGATTTGTAAAAGGAATTTTCGGGAGACTGGGCAGTTGAAAAGACATATGCGGGTACATAGCGGGGAAAAGCCATATACGTGCAAAATTTGTAATAAGCAGATAGGAAACTTATCCAAACACATGAAAGTGCATTCTGATGATAGGCCTTACAGTTGCAGTATATGCAACAAGCAGTTCTCTGTGAATGGCAACTTAAAGCTGCATATGCGTAtccacactggtgaaaaacctttTGCGTGCGATATATGTCATAGCCAGTTCACTCAGAGCAGTGGGCTGAAGAGACATAGATGTACGCATGGGAAGAATGATGTTTAG
- Protein Sequence
- MSESWKGNSLCRCCHAEGSFKGFADRCSSVSTAEIVSKMLRDTFNIRITSLPEGRPFDICERCEPRLQDASLFKQQVVACERKLRQYYAGAECKDGDILNKAVKVEVDAEDAKDESQQYDEQDNKYNEDNRLSSMEIFIQPILDDEDQPLSVLRSRRQSDDDWVPDHLSDGVKPYTCKICSKQFSSKSYLSIHERQHTGEKPFCCEICKKNFTAYTTLKVHMRVHTGLKPYSCSFCERQFAQMASFKLHERTHTGEKPYSCKVCKKPFSDNGYLKIHMRVHTGEKPYTCEICKRNFRETGQLKRHMRVHSGEKPYTCKICNKQIGNLSKHMKVHSDDRPYSCSICNKQFSVNGNLKLHMRIHTGEKPFACDICHSQFTQSSGLKRHRCTHGKNDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00012266;
- 90% Identity
- iTF_00012266;
- 80% Identity
- iTF_00012266;