Basic Information

Gene Symbol
znf423
Assembly
GCA_035041075.1
Location
JAWWLR010000004.1:40934742-40947578[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.3 9.1e+02 3.0 1.1 14 23 71 80 68 80 0.91
2 18 0.00013 0.051 16.4 0.4 1 23 86 108 86 108 0.98
3 18 8.3e-05 0.033 17.0 0.6 1 23 257 280 257 280 0.96
4 18 0.014 5.6 10.0 0.1 2 23 290 312 289 312 0.89
5 18 0.22 86 6.3 0.1 3 23 372 392 371 392 0.97
6 18 0.023 9 9.3 0.3 2 23 405 426 404 426 0.97
7 18 0.0016 0.65 12.9 0.7 1 23 435 458 435 458 0.93
8 18 3.9 1.6e+03 2.3 0.2 1 23 463 486 463 486 0.91
9 18 0.37 1.5e+02 5.5 2.0 2 23 559 580 559 580 0.96
10 18 0.0054 2.2 11.3 0.1 1 23 585 608 585 609 0.94
11 18 5.2e-05 0.021 17.6 1.0 2 23 727 749 726 749 0.96
12 18 0.044 17 8.5 1.0 1 23 758 781 758 781 0.93
13 18 6.1 2.4e+03 1.7 0.5 5 23 792 810 788 810 0.89
14 18 0.019 7.6 9.6 0.0 2 22 973 993 973 995 0.89
15 18 0.091 36 7.4 0.4 1 23 1001 1024 1001 1024 0.95
16 18 4.7 1.9e+03 2.1 0.4 2 23 1037 1058 1036 1058 0.92
17 18 0.2 79 6.4 0.1 2 23 1067 1089 1066 1089 0.94
18 18 0.055 22 8.1 2.6 1 23 1096 1119 1096 1119 0.94

Sequence Information

Coding Sequence
ATGCTCGCATTGCGAGGCTGCGTTCTCGAGAAGATATCTCGTGCAATTCGCATTCGAGTATCAGCTGATTATCGGACAACTGACAAGGTCTTAACCGCGACTGGACTACCTGTCAACCACTATTACAATCGCATTTCTGGATCTTTACGCCACGTCTCTATTCGTCGTCGTCCCATCTTAGAAGTCGGCTTGGGTGACCCAACAAAAGAtgACCACCTGAAGATCCACATGAAAACACACGACACGCAGAAGCCTTTCCAATGCACATCATGTTCCCGAGGCTACAATACAGCAGCAGCTTTGACATCCCACATGCAATCCCACAAAAGACACCAAAACTCTCAAGGATTAAAACTAGAAATGGATTTTGGACGTAGAAGTGTTTCCTCCCATAGCACAGCATCGCCTCCGATTCCCAATTCGCCTTCTCCAAGTCTAAATTTAACCCTAAGCCACAAAAACTCCCTAAAGTCGCAGGCTAGTGCCTCCAACACCCCAATCCTATCATCACCTTTAAAACTAGCCTGCATGTACTGTACTCGAGATTCCTTCACCAGCATGCAGCAACTTCAGATGCACGTTCACACAATGCACCAAGCAATCCTAAGTGGAGAAAATCTGATGCCATCACCAAGCCAAACCCTAGAACTATTAAACTCTAGAGACAAATCTGAACGTCAAGAACGAACCTTAAGGGAAGATCTCTTATACGAGAAACAGTTTCCAGAAGTTAGATCCCTGGAAGAAAAAGACATCTTCGACTCAGGATTTTCCTGTGGGCAATGTACcatgaaattttcttcttcaagTTCCCTCAGAGAGCATCTGATTTCCATCCATCGAACTAACGCTTTTGGATCATTGATGATGTGTCCCATCTGTGGAATTCCCTGTTCTTCAGCATCTGCCTATGCAGAACACTATGTCCTCCAACATTGTGAAAATAGAGGAATATCGGCTGAAGGTCAAGAGTATGGTGATCCAAAGATAAACGGATCCTATGACACCAAGGAAGCAAGAACTGCAAAAATATCAAAGGATCTAAACTCGGAACCAGCTGATTTAACCAAACACTccaaaattaacgaaaattattcAGCAGGGACTTTACTATGTGGACAATGTGGTGCAGCTTTGAAAGATTTCGAGTCTTTTAGAGAACACCTCGCAAGACATCTCCAAGCCGATCAGAGGAATGAAGTTCCAAGGAATCAGTGTCCAAAATGTGAAGCTTCCTTCCAGGAGAGAGAGGATATGATGGTCCATTTGACGAAGCATTTTCTGGGACAAGTTACAAAAGAATACGCCTGCAGTGCCTGCAAGAAATTTTACCCCCATCCTGATCTTCTTCAGAGGCACCTGCTTGATTCCCATGCTCACCATCTTTACAGATGTGCCCTTTGCAGAGACACTTTTGACTCTAGGGTAGCAATCCAGGTTCATTTTGCTGTAAAACACAGTCAAGAATGTCGGATTTACAGATGCAATGTCTGTTCTGGTTCGAACAATGAAAATTCTCCCGGGAATACTCCTGGTGAAAACAGGAACTTCTTCAGAAGCGAAGCTGAGATGGCGAACCATGTTAGAACTGTCCATGCTCCTCCGTCCATTGTTAATGCAAGTCCTCTTCCTAGGAGTCCTGTATCGACTCCAGGGATGACGAACACAAACCCAAGGTGTGTTTTTTGTGGGATTTGCTGTTCCTCCGACTTGGATCTTCAGCTCCACTTGGCAAGCCACTCGACAAGTTTGTACCGATGTCCCATTTGTCGGGAGGGATttgctgttgaatttttattagacAGACATATTGCACAGGCTCATCATGCTAATGATCATCCTAGCACTCCAAGAAGTCAAACTAGAGAAAATGGAAGGATAAATCGACCTTCGAGATCTCAAGAAGATTCTGTCAGTATAGATGTGAGGGAACTGAGGGAACAACGAGAGCAGAGGGATCAGAGGTCCCTGAAACGAGGAAGATCCCCTGCCTCTAGTAACAACAATTCTTTGAACCAAAGGGACAATAACAACAAGAGACCGAGTTTTGGAACTTCTCAACAATGTGAGCTTTGTGAAAGAGGGGAATTCGCCAACGATGCTGAACTGCAAGCCCATAAAAAATTGGCTCACACTCCTGCAAAGGTTCCCGGTAAATCGTTATCAGCTCTGAGCATGACTTGTGCATATTGTGGAGAGGTTTGTCGATCGAGAAGTGAATTAGAATCACATACAAGAATACAACATGCAACTAATGATCATGGAGGTCGTCACAAGTGCAACATCTGTGATGAAGTTTGTCCCTCTGGAGCAACTTTGGCCGAACACAAACTACAGAAACATTGTAAGATTCAACTGAGTGATGTTTGCATTGTTTGCAGAGGAAGTTTGTCTTCTGAATCTCACTTTTTGGAACACGTTCAGAGACACAGTTTGGAAAGTATTGATCCTCAACAGAGGCTGGATAGTTCAGTGCCTCATCTTCCTGCACCTTGCGTGGTTTGCAGACAAACTTTGATCAGTGATTTGGAGTGTAGGCTTCATGCAAGGCATCACCTGAGATCCAGTGGTGGTTCCCAGAGGTCAGACTCGAGTCCGAGTCCTAATCAGAAGACTCAGAGTCACAGTTGCTGTCTTTGTCTCAGAGAGTTTAATGGAGAGGAGTTTGTTAGTTTGCCGTCAAATCATTCCAGTAGTGGTAGtcaaacattaagagtttgtagAGCTTGTTATGTGAGGCATTCGCAAGGCCTTCCGATTTTGAACTCACCTTATGAGCATGCGAGGACTAGCCAGACTGAATCATGGATGAAGGATTCACATTGGGATGGATCTAGGGAGAGGTGGGATGgtgaaaggaattttaaaatggaaGGGAGGAATTCGAATGATGGAGGAGGATCGAGGGATGGAAGAAGATGTGAAGAATGTGGAGTAAAGTTTGAAGATCCGGAGGAGGCTGAGAGACATAGGGTTGCTGAACATGAGAAACCTGGGACTTATACTTGTATTCAGTGCCAGAGGTCTTTCCCAACTGAAGCTAAAATACAGGAGCACGTTAAAAAAGAACATCTTGAGGCTTCTGGGAAAACTGCTTTGGAAGCTTTGCGTTGTCATCTCTGTTTATTTGATGCCAATAGTCCCCTACAACTTCAGAGTCATCTTATAGAACACACTTTTGCCGGATGTACTGCCCTCAGTTGTTACATTTGTCAAGCCCTGTTTACAGCACCAATTGGACTTCagaatcacaTGCTCCAGCAACATGGTCTTGGTGCTCGACCTTACGATTGCAGGCACTGTGGTCTAAAGTTTTTCTTCAGAGCTGAACTCGATCATCACGTGGCTGTTTTTCATTCTACACGAGAAAATATTTCATCtcctcaagaaaaaaaaacacagaatGAAATTCAAGATTCTGAAAAACATACTGAAGCTTCTGATAAAGTGACCATCAAAGAAGAAGTTCGGCAAAGTGAAGATGAAGATATCAGTGTAGATATTAACGGTAAGTCCGAAAAAGTGGAAAAAGATTCTCGAAATCTCGAGTCTGAATCTGAAGAAATCCGAACCGAACTTGCCAAGTCTGAATCAGAATAA
Protein Sequence
MLALRGCVLEKISRAIRIRVSADYRTTDKVLTATGLPVNHYYNRISGSLRHVSIRRRPILEVGLGDPTKDDHLKIHMKTHDTQKPFQCTSCSRGYNTAAALTSHMQSHKRHQNSQGLKLEMDFGRRSVSSHSTASPPIPNSPSPSLNLTLSHKNSLKSQASASNTPILSSPLKLACMYCTRDSFTSMQQLQMHVHTMHQAILSGENLMPSPSQTLELLNSRDKSERQERTLREDLLYEKQFPEVRSLEEKDIFDSGFSCGQCTMKFSSSSSLREHLISIHRTNAFGSLMMCPICGIPCSSASAYAEHYVLQHCENRGISAEGQEYGDPKINGSYDTKEARTAKISKDLNSEPADLTKHSKINENYSAGTLLCGQCGAALKDFESFREHLARHLQADQRNEVPRNQCPKCEASFQEREDMMVHLTKHFLGQVTKEYACSACKKFYPHPDLLQRHLLDSHAHHLYRCALCRDTFDSRVAIQVHFAVKHSQECRIYRCNVCSGSNNENSPGNTPGENRNFFRSEAEMANHVRTVHAPPSIVNASPLPRSPVSTPGMTNTNPRCVFCGICCSSDLDLQLHLASHSTSLYRCPICREGFAVEFLLDRHIAQAHHANDHPSTPRSQTRENGRINRPSRSQEDSVSIDVRELREQREQRDQRSLKRGRSPASSNNNSLNQRDNNNKRPSFGTSQQCELCERGEFANDAELQAHKKLAHTPAKVPGKSLSALSMTCAYCGEVCRSRSELESHTRIQHATNDHGGRHKCNICDEVCPSGATLAEHKLQKHCKIQLSDVCIVCRGSLSSESHFLEHVQRHSLESIDPQQRLDSSVPHLPAPCVVCRQTLISDLECRLHARHHLRSSGGSQRSDSSPSPNQKTQSHSCCLCLREFNGEEFVSLPSNHSSSGSQTLRVCRACYVRHSQGLPILNSPYEHARTSQTESWMKDSHWDGSRERWDGERNFKMEGRNSNDGGGSRDGRRCEECGVKFEDPEEAERHRVAEHEKPGTYTCIQCQRSFPTEAKIQEHVKKEHLEASGKTALEALRCHLCLFDANSPLQLQSHLIEHTFAGCTALSCYICQALFTAPIGLQNHMLQQHGLGARPYDCRHCGLKFFFRAELDHHVAVFHSTRENISSPQEKKTQNEIQDSEKHTEASDKVTIKEEVRQSEDEDISVDINGKSEKVEKDSRNLESESEEIRTELAKSESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00980419;
90% Identity
iTF_00980419;
80% Identity
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