Basic Information

Insect: Acraspis erinacei
Gene Symbol: SCAND3
Assembly: GCA_035041075.1
Location: JAWWLR010000034.1:110510580-110512679[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.2e-05 0.0049 19.6 4.6 1 23 203 225 203 225 0.98

2 15 2.7e-06 0.0011 21.7 2.2 2 23 230 252 229 252 0.96

3 15 3.8e-05 0.015 18.1 0.8 2 23 298 319 297 319 0.97

4 15 3.6e-06 0.0014 21.3 2.4 1 23 325 347 325 347 0.98

5 15 0.0027 1.1 12.3 0.2 2 23 354 375 353 375 0.96

6 15 1.2e-06 0.00047 22.8 0.9 1 23 394 416 394 416 0.98

7 15 4.8e-07 0.00019 24.1 1.2 1 23 422 444 422 444 0.98

8 15 8.8e-06 0.0035 20.1 0.5 1 23 450 472 450 472 0.97

9 15 0.0004 0.16 14.9 0.2 1 23 478 500 478 500 0.99

10 15 0.00062 0.25 14.3 0.2 3 23 508 529 506 529 0.92

11 15 1.6e-05 0.0064 19.3 1.3 1 23 535 557 535 557 0.98

12 15 0.00035 0.14 15.0 4.7 1 23 563 585 563 585 0.98

13 15 3.6e-06 0.0014 21.3 0.2 1 23 591 614 591 614 0.96

14 15 4.1e-07 0.00016 24.3 0.6 1 23 620 642 620 642 0.98

15 15 3.1e-06 0.0012 21.5 4.5 1 23 648 670 648 670 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.2e-05	0.0049	19.6	4.6	1	23	203	225	203	225	0.98
2	15	2.7e-06	0.0011	21.7	2.2	2	23	230	252	229	252	0.96
3	15	3.8e-05	0.015	18.1	0.8	2	23	298	319	297	319	0.97
4	15	3.6e-06	0.0014	21.3	2.4	1	23	325	347	325	347	0.98
5	15	0.0027	1.1	12.3	0.2	2	23	354	375	353	375	0.96
6	15	1.2e-06	0.00047	22.8	0.9	1	23	394	416	394	416	0.98
7	15	4.8e-07	0.00019	24.1	1.2	1	23	422	444	422	444	0.98
8	15	8.8e-06	0.0035	20.1	0.5	1	23	450	472	450	472	0.97
9	15	0.0004	0.16	14.9	0.2	1	23	478	500	478	500	0.99
10	15	0.00062	0.25	14.3	0.2	3	23	508	529	506	529	0.92
11	15	1.6e-05	0.0064	19.3	1.3	1	23	535	557	535	557	0.98
12	15	0.00035	0.14	15.0	4.7	1	23	563	585	563	585	0.98
13	15	3.6e-06	0.0014	21.3	0.2	1	23	591	614	591	614	0.96
14	15	4.1e-07	0.00016	24.3	0.6	1	23	620	642	620	642	0.98
15	15	3.1e-06	0.0012	21.5	4.5	1	23	648	670	648	670	0.99

Sequence Information

Coding Sequence: ATGTCAGCTGAAAATACATcaccttataaatatttatttgtctaCGAAGACAGATCGTCAAGATACGTTGTGCTTAAAGCGACAAAAAGTAATGATCCGAAAAAAGTAGCGATGCATCTTCTAGATGTGATAACAATCATCGGCCCCCCTCATATTTTACAATCCGAAAACGGTCGAAATTTCACCGACCAAGTTGTCCAAGAATTGCGTTCTTTGTGGCACGGATTCAATATAATTAGTGGAGATCTTCTGAAATTAGCCTCgagtgaaagaaatttcaaaaatatgatcaaatccTGGCTGAGAAAACACAGAAGCAAAACGTGGCTGGATAGCATCAAATTCATTCAAGTTTTACAAAACGCAACCTTTCTTTCCCAGAACGGCAAATTGCCTCACGAATCACTTTTTAGCAGAAACGTCTATGAAGATTTTCTTCATTCTAATGATAAAAGCGATGATTTTATAGACGAGGATATTAAATTCGAGAGTAATGATCGTGACGATTCTTCCATTTCTGATGGCGACAATCGCGATGATGAAATTAGTGAAACTCCCGCGGATGACTGGATTTCCGACGacgaaaaatcaaaagaaaaacagCCCCACAAGTGTAAAATTTGCCCGAAAAAATTCGCAAAACTCGGACATTTGACGAATCATCTAAAGTCGCACAAGACCAGCAAAGAGTGCACGAAATGTGGGAAAAAATTTCGATCTCAGTCTCTTTACGAGAATCAtatgagcagaatgcatcaagaATTAGCCGAGAGTCTCAGCAATGAAAGTAATAATTCACCAGAGAAGGAAAGCCAGGAGGCATTGTCAGAAAAGGTATTAAAATCCGGAAAAAGAGCGAGAAAGCGAGCGAAGATGAACGGAAGTTTATTGAAATGTAGCTACTGCTCGCAAGAATTTGAATTCCCGAGTGTTTTAAAAAGACACATTCGCTCGCACACGAACGAGCGACCCTACGTCTGTAAGATCTGCAACAAAAGCTTCAAACAACTCGGACATCTCAGCCAGCACTCGATAACTCACACAGATTACCGATCTCTGCAGTGCGGCGAATGCAGTCTCAGATTCGAGTCGCTGGACGCCCTCAAAATTCACTCGCAGAGCCACGATCCGGCCGAAACGAATGAAAAATCCACGCCCAATCTCTCGATGGCGCGTCTCTTCGAGTGCGACGTCTGCAGGAAAGTGTTCACAACGAAGAGCGTCCTCGAGCGCCACATCTTCACGCACACGCATGAGCGCCACTTTGAGTGCGAGGTGTGCGGCAAACGATTCAAGCAGTCGGGTCACGTCAAGTCGCACATGCTCGTGCACACGGGAGAGCGCAAATTTGCCTGCACCGTCTGCCCGAAGCGCTTCAGTCTGGCGAATTCTCTCAAGAAGCACATGTACATTCACAGTGGCGAGAAGCCCTATCAGTGCGACATCTGTGGCGCGCGATTCCTCGAGAAGCGAAATCTGAATGGACATCTGATGACGCACACAAATGAGAAGCCCTTTGGCTGCAAAGTGTGCGGCAGGAGGTACACTCTGGCGGACACACTCAGGCGGCATGTGAGCGCCGCGCACGAGGATGGTCGCACCTATCAGTGCGAGATCTGCGCGAAGATGTTCAAGCAACTGGCACACTTGTCCGTGCACAAGAAGGTGCACAATGACGAGCGACCTTTCCAGTGTCATCTCTGCGAGAAGAATTTCAAGCACAAGAACGTGCTCAAGTCGCACTTGGCGATCCACGCGAATTTGCGGCCCTTCGAGTGCGACGAGTGCAAGGCGACGTTTGTGCGCAAGACGAATCTGCAGACGCACATCGCCTCGGCGCATATGAACGAGAGGCCGTACGAGTGCACGATTTGCGGCAAGAGGTTCAAGCAGGTGAGTCATCTCAATGGACATATTATTGTGCACAGTAATTCGATGCCGTATCAGTGCGACTTTTGTGATCGGAGGTGCAACAGGTTGGACAATTTGAAGAAACATATGCGACTGCATACGAAAGTGAATATTGTGAGGACAGAGCTGGTGAGGGGGGGAGGAGGTGTTTCAATGAGTCGAAAGGAACTTCCTGCAGCAGGATTTTGA
Protein Sequence: MSAENTSPYKYLFVYEDRSSRYVVLKATKSNDPKKVAMHLLDVITIIGPPHILQSENGRNFTDQVVQELRSLWHGFNIISGDLLKLASSERNFKNMIKSWLRKHRSKTWLDSIKFIQVLQNATFLSQNGKLPHESLFSRNVYEDFLHSNDKSDDFIDEDIKFESNDRDDSSISDGDNRDDEISETPADDWISDDEKSKEKQPHKCKICPKKFAKLGHLTNHLKSHKTSKECTKCGKKFRSQSLYENHMSRMHQELAESLSNESNNSPEKESQEALSEKVLKSGKRARKRAKMNGSLLKCSYCSQEFEFPSVLKRHIRSHTNERPYVCKICNKSFKQLGHLSQHSITHTDYRSLQCGECSLRFESLDALKIHSQSHDPAETNEKSTPNLSMARLFECDVCRKVFTTKSVLERHIFTHTHERHFECEVCGKRFKQSGHVKSHMLVHTGERKFACTVCPKRFSLANSLKKHMYIHSGEKPYQCDICGARFLEKRNLNGHLMTHTNEKPFGCKVCGRRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANLRPFECDECKATFVRKTNLQTHIASAHMNERPYECTICGKRFKQVSHLNGHIIVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKVNIVRTELVRGGGGVSMSRKELPAAGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200975;
90% Identity: -
80% Identity: -