Alat017144.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014446.1:6326290-6328755[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-10 7.5e-08 33.1 0.0 2 38 11 48 10 54 0.87 2 2 5 2.6e+03 -0.7 0.0 21 29 351 359 350 360 0.89
Sequence Information
- Coding Sequence
- ATGGCGCCTACAAAAAGGCAAAAATGGGATAAAGATTCCATGGCTATGGCTATATTGGCTATACGAGAAAAGAAAATGGGATTTTTAAAAGCATCAAAAACTTTTGGCGTACCAAAAACGACTCTTTTacgattatgtaaaaaaaatgaagttatGGGAATGGAAGATGTGACAAACATAAAATTGGGGAGAAAGGCAACATTTCCAGTCAATTTGGAGGCCGATTTGGCTGCATATGTACTTGAACTGGAGGCATTAGGTTTTGGTTTAACTCGGAGAGACATCAAGTCTTTAGCCTTTCAACTagctgaaaaaaataacataagccATCCCTTCTCCAAAGAAAACCAGACTGCTGGCAGAACGTGGCTGCGCTTATTTTTGAGACGCCACCCAGAACTTTCTTTTCGGCAGCCCACTGGAACATCTATTGCCAGATTAAAAGGCTTTAATAAAGAAAGTGTTCGTGAATTTTATAGcttattagaaaacgcaatgGACAAACACAAGTACACTCCCAACAATATCTACAACGTCGATGAGACGGGAATATCAGTTGTGCCTAATAAAATGCCTGAAGTGTTGGCGCAGAAAGGAAAAAAATCGGTCGTTGCCACCACATCTGCTGAGCGAGGTGCTACCATTACATGCGTTATGTGTATGAGTGCTAGCGGGTCATTCATTCCACCGATGATGATTTTCCCCCGCAAACGAGATCATCCTCTATTGATGAAAGGAGCCCCGCCTAGTGCAATACATGCATGTCATCCATCCGGCTGGATCCAAACAGACCTTTTTACGAAATGGTTTAAGCACTTTTTACAGCATGCGAAGCCATCCGGGGCTTCACCTGTACTCTTGATTTTAGATGGTCATGCTAGTCATACCCGTAACATCGAACTGATTGATTTAGCACGTGAAAACCATGTACAACTGCTGTCTTTACCGCCACACTCAAGCCATAAAATGCAGCCTCTTGACCGCACTTACATGGGTCCACTAAAAAAATACCTGGCAGAGGAAATTCGACAGTGGATGCGAAATAAAACTCAAGCAGCTACACAGTACGACATTGCAGAACTGTTTGGGCGTGCCTACATAAGAGCACAGCGAGCTGAACTTGCTATCAATGGTTTTCGTGTAACTGGAATATGCCCATTAAACAGAAACGTTTTTCAAGATCACGATTTTATTGATGATGCAGAGACAGATGAGATTATTCTCTCAAGTTCCCATTTTCAGCAAGCTAATTTAATCAACACGAGTCAAGAGCAAACAATAATTAGCGAACCCCAAGTTGATGCAGAGACGGATGAGATTATTCCTTCAAGCTCTCATATTCAGCAAGCTAATTTAATCAACACGAGTCAAGAGAAAACAATATTTAGCGAACCTCAAGTTGTGAATAATACTAGTCATCCCCAAATTGATCCATTACAATCAGTCAATATGTCCCTACCAATTACTTTAAGCCGAGATCAACAATCTGACCATAATCTAATTACGGCCCAAATTAATGAACCCGATGTTCTTAATAAAAAACAGGATCAAAGTGAGCCATGTGCGTCAGTTAATGAATCCCAACTGACTGTTGTAAATCAAGACCAACTACCTGAGGATGATTTAATATTGGCAGATGACATTCTTCCTACAATTTCTCACATTGAGCAAGCAAATCCGATCCAATTTCAAACAATTACCAAAGAACCTGAAAATGAAACTCTGAGTACGGCAGCGGGAACCAAGGCTATAAATGAAGTCCAGACATTGGCTCAGTTGGCATTAGCTGTAATTTTGCTTGGAGAGAAGTCATACGTCGCTGcaaaagttatttataatgaAAGTCCATCTACTTCTACTTACTTTTCTCCAAAGCAGCTATTTGATGTACCACGACTAACTAAAAAATCTAGTAACAGAGGAAGAAAGAGCAGTAAATCTACATTTTTGACATCGTCACCGTACGAACTAAATTTAGAAACATCaattaaaaagaaagaagaCGCAGAGTTATTGAAAAAAACACGAAATATAGCAAAAGAATTAAAAGAATCCAACAAAAAAGAACTAAAGAAAAAAGCTGAAACAAAGAAAGGAATGAAGAAAAGAGATGAAGAACCTAAAACGACAAATGCGTCTCTCTTTTCAGATGACACTCGTGGAGAACAATGGATACAGTGTCCTTCTTGTGAGCGATGGGCACATGAAGAATGTGCTGGTGTCGATGGCATTTCATTTTTATGTGAACATTGCTCTAATTAG
- Protein Sequence
- MAPTKRQKWDKDSMAMAILAIREKKMGFLKASKTFGVPKTTLLRLCKKNEVMGMEDVTNIKLGRKATFPVNLEADLAAYVLELEALGFGLTRRDIKSLAFQLAEKNNISHPFSKENQTAGRTWLRLFLRRHPELSFRQPTGTSIARLKGFNKESVREFYSLLENAMDKHKYTPNNIYNVDETGISVVPNKMPEVLAQKGKKSVVATTSAERGATITCVMCMSASGSFIPPMMIFPRKRDHPLLMKGAPPSAIHACHPSGWIQTDLFTKWFKHFLQHAKPSGASPVLLILDGHASHTRNIELIDLARENHVQLLSLPPHSSHKMQPLDRTYMGPLKKYLAEEIRQWMRNKTQAATQYDIAELFGRAYIRAQRAELAINGFRVTGICPLNRNVFQDHDFIDDAETDEIILSSSHFQQANLINTSQEQTIISEPQVDAETDEIIPSSSHIQQANLINTSQEKTIFSEPQVVNNTSHPQIDPLQSVNMSLPITLSRDQQSDHNLITAQINEPDVLNKKQDQSEPCASVNESQLTVVNQDQLPEDDLILADDILPTISHIEQANPIQFQTITKEPENETLSTAAGTKAINEVQTLAQLALAVILLGEKSYVAAKVIYNESPSTSTYFSPKQLFDVPRLTKKSSNRGRKSSKSTFLTSSPYELNLETSIKKKEDAELLKKTRNIAKELKESNKKELKKKAETKKGMKKRDEEPKTTNASLFSDDTRGEQWIQCPSCERWAHEECAGVDGISFLCEHCSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009936;
- 90% Identity
- iTF_00009937;
- 80% Identity
- -