Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.0025 57 4.5 0.0 172 205 70 103 62 106 0.82

2 3 1.4e-09 3.2e-05 25.0 0.8 4 50 95 141 92 171 0.85

3 3 0.19 4.1e+03 -1.6 0.0 126 138 200 212 185 216 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.0025	57	4.5	0.0	172	205	70	103	62	106	0.82
2	3	1.4e-09	3.2e-05	25.0	0.8	4	50	95	141	92	171	0.85
3	3	0.19	4.1e+03	-1.6	0.0	126	138	200	212	185	216	0.79

Coding Sequence: ATGAATCGCACAATATATGCAAACCGTCGCGGAGGCGCCGCGAAGGGTCCGGAGTCGGAAGAGAAGGTGCGGCGCACGGCGGAGCGCGAGggccggcggcgcgcgcggcggctgCGGCGCGAGGCGGCAGCTGCGGCCGGCGCACACCGCGACGGCGACTCCAGCGACGACGAGCTGCCTCCCGCCGAGTTGCACCACTACATGCAGGAaaaagAGGCGATCcgtgcggcggcggcggttCTGTTCGCGGACGCGCTGCCGGCGTGGCGCAGCGCGCGCGGCGTTTGTGCGCGCCTGGCGCGCTGGCGGTGCCGTGACCCCGCGCTCTACGCCGACGCCTACGTCGCTGATTATCTGCCGAAGCTGCTCGCGCCTTACGTACGCCACCAGCTGATCCTGTGGAACCCGCTAGCGGAAGAGGACAACGAGGACTACGAACGTATGGACTGGTACAGCTGTCTGATGATGTACGGCGTCCGGGAAGAAAAGCTCTCGTCCGAGTCATCAGGGTCCGGCGAGGAGGATGGCACTTCGGGcgtggcgggcgcggcgctcacggaGGCGGGCGTGCGTGCCGACCCCGACCTCATGCTCGTGCCCGCCATCTTGCGCGGTGTCGTGCTACCCAAACTGACAGgtactcaaattaaataa
Protein Sequence: MNRTIYANRRGGAAKGPESEEKVRRTAEREGRRRARRLRREAAAAAGAHRDGDSSDDELPPAELHHYMQEKEAIRAAAAVLFADALPAWRSARGVCARLARWRCRDPALYADAYVADYLPKLLAPYVRHQLILWNPLAEEDNEDYERMDWYSCLMMYGVREEKLSSESSGSGEEDGTSGVAGAALTEAGVRADPDLMLVPAILRGVVLPKLTGTQIK

Sequence clustering based on sequence similarity using MMseqs2