Agri022944.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- Bcl11a
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000462.1:161502-169060[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6e-05 0.0012 19.8 1.6 1 23 219 242 219 242 0.93 2 11 7.4e-05 0.0054 17.8 2.0 2 23 249 270 248 270 0.97 3 11 0.055 4.1 8.7 0.1 1 23 274 297 274 297 0.97 4 11 0.014 1 10.6 2.5 1 23 301 324 301 324 0.96 5 11 8.4e-06 0.00062 20.7 2.8 3 23 329 350 327 350 0.96 6 11 0.009 0.66 11.2 7.9 2 23 354 375 354 376 0.95 7 11 0.004 0.29 12.3 0.2 3 22 391 410 390 414 0.91 8 11 1.5e-05 0.0011 19.9 0.1 2 23 423 445 422 445 0.96 9 11 0.0011 0.084 14.0 5.0 1 23 451 474 451 474 0.95 10 11 7.5e-05 0.0055 17.7 1.0 2 23 484 505 483 505 0.97 11 11 6.9e-05 0.0051 17.8 1.1 1 23 511 534 511 534 0.98
Sequence Information
- Coding Sequence
- ATGTATTCAGTAAAAGTGGAGTTAGATAGAAAAGACATTTGTCGCGGCTGCCTCAGTACAGACAGGCAAACagctttaataaaaaagtatgcgGATTTATTCTTCAGCTTGTTAGGAGATCAGCAACAGTATTCAGatgcaaaattatatttatgttgggAATGCAGAGCGCTTCTGAAAGGGATCCAGAAATTCCAGGATCGTATTCAACATGCACAGTTTATACTGCAAGAATCACTTTTTGCACtgggAAACATATCACTATCAAGTCTatcaaatttatcaaaaatacaaaaagatttcTACGATGTCATTATAGATGAGGATGAACCAAAACCAATACAGGAGAACAACCTAGAAGAAGAAGTagacaatttaattaaacaagagATAGACGACGTTGATGATTCCTTTCAGGATTTTAAAGCTGAAGACGACCCACCGGAATTCATAGACAATATAGTGCCACAGATAAAAAAAGAGAGTATAAAGAAACACTCTATAAAAAGGTATGAGAGTAAAGCGCGTGTGATCAAAAGTGATATAGATTTAAGTGATTCAAAAAAGTACTGGGTTAGAGTGTACTTGAATGAGACAGAAATAGAAGAATTATTAGAAAGAGACAACATTACTAGCAGTTACAAGAAGAAGCCTTATAAGTGTGAAGATTGCAATAAGGCATACAAGAGAGAGGTAGATTTTAAGAGGCACATTACATTTTCTCATCGGGACCAATCGGCCCTCAAGTGTACAATGTGTAAAGTAAAGTTCACGTCGTGGCCGTCACTGGAGCACCACTGGAGGCGCCACAACGTGCACTACCGCTGCGTACTATGCGGCTGGCTGTCCCGCAGGCCGACGGCTATAACCGCACACAACAGACGAGTGCACTCGAtggtgtatgtttgtaatacttgTGATGCCAGGTGCCGTACTTTGAGGGAGTTTAGCAATCATTACAAGGAAGTCCACGAGCGGATCATTTGTGACCACTGCGGTAAGAGCTTCATGAAGAAACGAACTCTGGAGAAACATATAAAACGTAACCACTTACCAGCAACCTGCCACACCTGCGGCAGAACGTACGCTCATTACCACGTCCTAGAGAACCACTACAGGATGCACCATCCGGAGCTAATCCGCGGCGACACGAGGACAGAGCTGGCGTACTGCGTCGAGTGTGACAAACAGTTTCCCACGGTATACAAGTATAGGCGGCACCTGGCGACGGCCGCTAAACATACACCGCCCAAACCTGTCAGGATTCCATGTCCGGAGTGTGGCAAGGTATTCGCACGCAAAATCCGCATGACCAACCATTATAGGTCGGTGCATATGAACAACACGAAGCACAGATGtgatatatgtaataaaACGTTCTGTTCGGCGTACTCGGCACGGACGCACCGGCAGTACGTGCATGAGAAGATACCGATGCCGAAGAACAAGATGTGCGACATATGTGGACGGGGTTTCAGTaCAAATCGGATCCTTACAAACCATCGAAGAACTCACACAGGCGAGCGTCCCTACAAATGTACATACTGCCCAGCCACATTCGCACAACGGACAGCTATGAAGACCCATGAAAAGACTCAGCACAAAAATCTAGTCTATACCGCATCTTAA
- Protein Sequence
- MYSVKVELDRKDICRGCLSTDRQTALIKKYADLFFSLLGDQQQYSDAKLYLCWECRALLKGIQKFQDRIQHAQFILQESLFALGNISLSSLSNLSKIQKDFYDVIIDEDEPKPIQENNLEEEVDNLIKQEIDDVDDSFQDFKAEDDPPEFIDNIVPQIKKESIKKHSIKRYESKARVIKSDIDLSDSKKYWVRVYLNETEIEELLERDNITSSYKKKPYKCEDCNKAYKREVDFKRHITFSHRDQSALKCTMCKVKFTSWPSLEHHWRRHNVHYRCVLCGWLSRRPTAITAHNRRVHSMVYVCNTCDARCRTLREFSNHYKEVHERIICDHCGKSFMKKRTLEKHIKRNHLPATCHTCGRTYAHYHVLENHYRMHHPELIRGDTRTELAYCVECDKQFPTVYKYRRHLATAAKHTPPKPVRIPCPECGKVFARKIRMTNHYRSVHMNNTKHRCDICNKTFCSAYSARTHRQYVHEKIPMPKNKMCDICGRGFSTNRILTNHRRTHTGERPYKCTYCPATFAQRTAMKTHEKTQHKNLVYTAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736840;
- 90% Identity
- -
- 80% Identity
- -