Agri005056.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000084.1:7571515-7579217[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.12 5.8e+02 0.9 0.0 11 35 424 448 417 453 0.83 2 8 0.0036 17 5.8 0.0 11 35 463 487 460 493 0.93 3 8 0.0036 17 5.8 0.0 11 35 502 526 499 532 0.93 4 8 0.0036 17 5.8 0.0 11 35 541 565 538 571 0.93 5 8 0.0012 5.8 7.3 0.0 11 35 580 604 577 610 0.94 6 8 0.0036 17 5.8 0.0 11 35 619 643 616 649 0.93 7 8 0.012 57 4.1 0.4 12 35 776 799 766 805 0.88 8 8 4.1 2e+04 -4.1 0.0 11 20 814 823 814 830 0.79
Sequence Information
- Coding Sequence
- ATGGTGGCCAGAACAGCTCCTGAAGTGGAACATCAGGTTTTGGCATTTTTAAGTATTAAGTGGTCATACTCTCgaataataaaacactttaaaGGTCTGAAAATCAAATTGCTTAAGAGTACCATAACTGAGATCAAGAAGAGAAGTGAAAATGTTAACCAAATCAAGCCAAAGGGTAAACCGCCGGGTCGTAAACCACCACTAACGGAACGCCAATTCAAACAACTGGAAACTATGGTTAATAACCCAAACCCTCCGACACAACAAGCGATGGCCGATATCTTGAAAGTGAAGAGACATGTTACGTATACCAACAACAGTCACATCCTAAGGGTGTTATGggcCTTAACAGAGCTAGATAGATGGCGAAGTGCGTTCGAGAGGCTGCAGCAGATGATGGCACTGAGGGCGGAACATTGGCTGCTATGGTTGCAGACAGAGGCATCACTGGCGCACACGTGGCAATCGCGTGAACGTATCGCTGAATTGTTTAAGCAGGCTACACTAGACTGTTACTcAATCTCAATTCTAACTGAGTGGTGCACATGGGCGATGGGGGTCGGTGATGTGGCAGCGGCGCGCGAGCAGCTCGACGAAGTGTTGCGACGTGCAGGTGCAGATCCCTTCTCTGGGAAGTTGTTTTGGGACGCCAAGCTGGAGTTGGAAAAATCGCAGTTGGAGACTATGAGTGAAGAAGACACGGAATATAAAGCGCAGCAAGAACGTGTACTATGGTGTCTTGAAGAGATCGTTTCCCGCCCGCTTTTGCGAGGAGAAGAAGCATGGCCACAACTGCAAGAGTTGGCCACTGTGTTAcatgatgaaaaatatattgaaaagGTAAAGAAGCAACACGAGGCAGCTGTagattatttgcaaaaaataacACCATTTGAAGATAAGCTTCTTACAACAgaaaACATTGAggaaaagtataaaatttatcagGATTACATTGAAACGTTGAAGGATCTTGCACAACGTGACAAGTATGCCGAGTGCGACTGTAACGGAATACTCAAGGTAGGTAGTAGAAGATGCTCTTCTGCAGCTCCAAGGTGGCTCCTTGAAGCAGCAGAAGACCATCTTCGGCGTGACGTATACGACTCCTTTCTAAGGGCATACCTAGGATTTCGACTCGGCTCGATCTCGTCTCAGGTCGGCGAGGTTTTGATGGCCGTTTTAATAGAACAGGGGATTGATCGATGGGGTGGACGATTACCCGGAGTATTGCCCAATTACACAGGTCAGGTTCGTGCGGCGGCGGGGCTGCTGTGTGGGTGGGCGCGGGGTGTGTGTAGTAGTGACACTAGCGGTAATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCATGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGGGTGGGCGCGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTAGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGGCTGTGTGGGTGGGCGCGGGGGGTGTGTAGTCGTGACACTAGCGGTCATCGTGCGCGCGTGCAGGTGGTGTACGACCGCGCGTCGGGCTcgtgcggcggcgcggcggcggcggggctGCTGTGTGggtgggcgcgggcggcgcgcggcaGTTCTCGGGCGACGGTTGCTCGCGTGCTGGACGCCTGCACGCGTCGCTGCCCACGCCGACACACCTTCTGGCAGCTCAAGATGCAGCAGGCCGAGCACGAGGAGAAAACCTTCCAAGAGGTGAAAGGGATATTCGAGACGGCTCTGTCAAAAGGGATGGAGTCGTACAAAGAAGCCGAAGCTCTATGGTTAGGCTACTTAGAATTCATACGTCGTCGCACCGCGTTCGACAATGAATCTGACGTTGATAAACTTCGGAGGACCTTCCGACTCGCTTGGGATTCACTTGCtgagGCATGGGGAGAAGAAGCCAATGATTGTGAAGTACCTCTGTATTGGGCCCGACTTGAATACAAACGAATGAATGATCCCAAGCAAGGCAAGGAGatatttgaagaaatatttaAGTACGGCGAGAACAAGAGCATGTCGAAGTACTGGGAGGCGCTGCTGCAGCTGGAGATGCGGCGCGTGCCCGACGCCGCCCACATTATTGCGCGCGCTGCTGCGGCGTAA
- Protein Sequence
- MVARTAPEVEHQVLAFLSIKWSYSRIIKHFKGLKIKLLKSTITEIKKRSENVNQIKPKGKPPGRKPPLTERQFKQLETMVNNPNPPTQQAMADILKVKRHVTYTNNSHILRVLWALTELDRWRSAFERLQQMMALRAEHWLLWLQTEASLAHTWQSRERIAELFKQATLDCYSISILTEWCTWAMGVGDVAAAREQLDEVLRRAGADPFSGKLFWDAKLELEKSQLETMSEEDTEYKAQQERVLWCLEEIVSRPLLRGEEAWPQLQELATVLHDEKYIEKVKKQHEAAVDYLQKITPFEDKLLTTENIEEKYKIYQDYIETLKDLAQRDKYAECDCNGILKVGSRRCSSAAPRWLLEAAEDHLRRDVYDSFLRAYLGFRLGSISSQVGEVLMAVLIEQGIDRWGGRLPGVLPNYTGQVRAAAGLLCGWARGVCSSDTSGNRARVQVVYDRASGSCGGAAAAGLLCGWARGVCSRDTSGHRARVQVVYDRASGSCGGAAAAGLLCGWARGVCSRDTSGHRARVQVVYDRASGSCGGAAAAGLLCGWARGVCSRDTSGHRARVQVVYDRASGSCGGAAAAGLLCGWARGVCSRDTSGHRARVHVVYDRASGSCGGAAAAGLLCGWARGVCSRDTSGHRARVQVVYDRASGSCGGAAAAGLLCGWARGCVVVTLAVIVRACRWCTTARRARAAARRRRGCCVGGRGGCVVVTLAVIVRACRWCTTARRARAAARRRRGCCVGGRGGCVVVTLAVIVRACRWCTTARRARAAARRRRGWLCGWARGVCSRDTSGHRARVQVVYDRASGSCGGAAAAGLLCGWARAARGSSRATVARVLDACTRRCPRRHTFWQLKMQQAEHEEKTFQEVKGIFETALSKGMESYKEAEALWLGYLEFIRRRTAFDNESDVDKLRRTFRLAWDSLAEAWGEEANDCEVPLYWARLEYKRMNDPKQGKEIFEEIFKYGENKSMSKYWEALLQLEMRRVPDAAHIIARAAAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -