Agri000201.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000004.1:1088782-1090302[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-08 1.5e-05 25.2 0.1 5 38 1 34 1 38 0.91 2 2 6.6 7e+03 -2.5 0.0 7 15 346 355 345 356 0.85
Sequence Information
- Coding Sequence
- ATGGAAGACGCAATACGTGAAGTATTGTCAAAGACTTTATCTATACGCAAAGCAGCCGACAAATATAGCATCAAAACTGCGACCCTACAACATCGCATAGAAAAAGCCAGAAAATCATTTGAAGCTACCAGAATATTATCTACAAATGAAGCATCCTCTTCATTACAAGCAGAATCTTCTTTATCACAAGCAGGTCCATCTTCACCACAAATAGCACCATCTATGGAGATGGCACAAATAGCGTCATCTTCAGCACACACTACTACTGCAGCTTTATCATCACACACTGCTACAGCTACTTCATCAAACATCTATGGTTCCAAGTATACCGTTGCACAAGTTTTTTCAATCGAACAAGAAAAGGCATTGactcaatatttattgaattgcAGTAAAATGCACTACGGCCTTACATTGAGACAGCTTTTGACTTTGGCATACGAGTTCGCAGAATCCTCAGGGTGTAATTATCCAAAACCCTGGAAAAAAAACAAATGCGCTGGAAAAGATTGGGCAGCTGGCTTCAGGAAGAGAAACCCAGAATTGAGTCTACGAAAACCAGAAAACACAAGCGCAGCAAGAAGCTTTGCTTTTAATAAAGCTGCTGTAGCTCAATTTCATGATAATTACGAACGCATAATGAGACAGTACAATTTTACACCCGATCGAATAATAAACTTAGACGAAACAGGCATAAGCACAGTTCTTTCTACTCCTAAAGTTATTGCTGGAAGAAAACAAAGACAGGTGGGACAAATAGTTTCTGCAGAACGCGGAGAGGTAGTTACTTTCTGTGGTATTATTACTGCTACTGGTTCTTCTCTTCCTCCAGTTTATGTCTTTCCAAGAGTTCACTACAAAGATCACTTCCTAAATGGAGCTCCTGATGGAAGTCTAGGGTTGGCAAACAGAAGCGGCTGGATGACATCAGAATTGTTTATAAGAGTTTTGAAACACATTCAACGCCTTACTTCGAGCAATAAAGATAACCCAATTCTAATCATTTGTGACAACCACGGATCGCACATTTCAATAGAAGCTGTTAACTACTGTCGTGACAACGGTATTGTTTATTTGAGTCTGCCCCCACACACGTCACACAAATTGCAACCGCTTGATGTCAGTGTGTTCGGACCCTTCAAAGGCAAATTGAAGATAGCTTTCAACGACTGGCACATTCAAAATGTTGGAAAGACTTTGACCATATACAACATTGCCAAATATGCTAATTTTGACAGTTCACTGTCAAAATTAGCATATTTGGAATCATTTACACCAAAGAATATCATAGGTGGTTTTTCCAAACCTGGAATTTGGCCAATTAATAAACTGGTATTTGGCGACGACGACTTTGCACCGATAGACATTTTCAGCAAAGGTTATCACGATTTGACAGATGAGAACACTCACAAAACACAAGATTTACATTTTGTAGACTCGGAAACAAGTCAAAATAATGAAGTTGTTGATAGAGAACAAAATAAAACTCCTACTTTGGATACCGACCCAATTTCAGTCTGA
- Protein Sequence
- MEDAIREVLSKTLSIRKAADKYSIKTATLQHRIEKARKSFEATRILSTNEASSSLQAESSLSQAGPSSPQIAPSMEMAQIASSSAHTTTAALSSHTATATSSNIYGSKYTVAQVFSIEQEKALTQYLLNCSKMHYGLTLRQLLTLAYEFAESSGCNYPKPWKKNKCAGKDWAAGFRKRNPELSLRKPENTSAARSFAFNKAAVAQFHDNYERIMRQYNFTPDRIINLDETGISTVLSTPKVIAGRKQRQVGQIVSAERGEVVTFCGIITATGSSLPPVYVFPRVHYKDHFLNGAPDGSLGLANRSGWMTSELFIRVLKHIQRLTSSNKDNPILIICDNHGSHISIEAVNYCRDNGIVYLSLPPHTSHKLQPLDVSVFGPFKGKLKIAFNDWHIQNVGKTLTIYNIAKYANFDSSLSKLAYLESFTPKNIIGGFSKPGIWPINKLVFGDDDFAPIDIFSKGYHDLTDENTHKTQDLHFVDSETSQNNEVVDREQNKTPTLDTDPISV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090655;
- 90% Identity
- iTF_00237426;
- 80% Identity
- -