Afla003380.1
Basic Information
- Insect
- Achlya flavicornis
- Gene Symbol
- -
- Assembly
- GCA_947623365.1
- Location
- OX392496.1:5885158-5887554[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.6e-06 0.00023 21.8 4.0 1 23 8 31 8 31 0.95 2 19 0.0017 0.11 13.4 0.3 2 23 37 59 36 59 0.94 3 19 1.7e-05 0.0011 19.7 0.4 2 23 68 90 68 90 0.97 4 19 2e-06 0.00013 22.6 1.5 2 23 99 121 98 121 0.95 5 19 1.1e-05 0.00068 20.3 1.2 2 23 129 151 129 151 0.97 6 19 1.5e-06 9.7e-05 23.0 2.4 2 23 160 182 159 182 0.96 7 19 1.3e-06 8.5e-05 23.1 1.7 1 23 188 211 188 211 0.98 8 19 0.026 1.7 9.6 0.4 1 23 219 242 219 242 0.97 9 19 0.0019 0.12 13.2 0.1 2 23 259 281 258 281 0.94 10 19 4.4e-05 0.0028 18.3 0.4 1 23 307 330 307 330 0.96 11 19 0.013 0.84 10.6 1.5 2 23 367 389 367 389 0.95 12 19 0.001 0.065 14.0 5.7 1 23 412 435 412 435 0.97 13 19 9.4e-06 0.0006 20.4 0.5 2 23 442 464 441 464 0.96 14 19 3.3e-05 0.0021 18.7 2.2 2 23 471 493 470 493 0.94 15 19 0.0077 0.5 11.3 2.2 1 23 499 522 499 522 0.97 16 19 0.2 13 6.9 7.1 2 23 530 552 530 552 0.95 17 19 0.00028 0.018 15.8 0.3 1 23 559 582 559 582 0.97 18 19 0.067 4.3 8.3 3.8 1 22 589 610 589 612 0.89 19 19 0.018 1.2 10.1 2.7 3 23 627 648 626 648 0.91
Sequence Information
- Coding Sequence
- ATGTATTCAAGCCAGTTAGACTTTGTTTGTGACTACTGCAGTCGCTCTTTCACAAGAAAATATAATTTACAAACTCATATAGAAAATTGTCATATAAATTCAACATGCTATTGCGAGATTTGTGAGCAAACTTTCGGTAGCCCAGCTGGGTTACAACTTCATCTCACGAGAGGACATAACAGGTATGGACTACCGCTTCCAGAGTGCGATTTATGTGGACGAATTTTTACCAGGAAACAGAATATCATGTCACACATGATGACAGTTCATTTACAAGGATTAGGTCCGCAAATTCGTTGTAGATTGTGTGGAAAATCTTTTACAACGGAAAGGAACTTGAAGAGGCATTTGAATCAGTTGCATAACCCAAATGTTGAGTACCCAACTTGTGATGAATGTAATAAAGTGTTTAAAGGGAAGCATTCCTTGATTGTACATATACAGACCATGCATACTTCTACGGTAAGGGGAATTATTAAATGTCATTTGTGTGACAAAGTATATACAAACAATCGTAACTTGAAAAGACATATTGAAATGTTTCATGGTGAGAGAGGTGAATTTAAATGTGATATTTGCCCTAAAGTGTACACTTCCAATCAGAGTTTGCGAAGGCATTCTAGAACAAGGCATAATACTGATAATCAGGAACAATACAAGTGCGATTTCTGCCCGAAAATAATTTTTGGTAAAGATAATTTGGATAGTCATACACAAGTGTATCACAGACAAGATAGTCCAAATGATGATTTGGAAATGAAAGACAGTGATATTACTTGCGACTCTTGCGGAAGGAGTTTCGAAGAAGAGCCTCAGTTACGACAGCATGTTAAATTAGAACATTCGTTTAAAACATTCTACAAGTATTGTAGGAAGTCTTTGTTGAAACAGTACGGTGGCGGTGGGGACATACATTTCTACAACTGCGAGTTTTGTAACATTGCTTTTACTACTGTTTATGAGTTAAAGGACCATATGAGGGCGAATCACGATATTGAATATAATCTCTCCACTTGTAATGTTTGCTTCAATAAATTCTACAGTAAAGAAATCATGATCGAACATAAGAAAATCTGTATTCCACCAGCAAATGTTAACTCTTGCAGTCATTGCGATAAATTATTCACAGATATATCTAGCTTAGAATTCCACGTTAGAATTTTTCATCCGCAAGCACAAATCGCTGATTCTAATATAACTTCGACCAATTATGAAGAAGTACTTGACGGGTCTTATAAATGCGTCCACTGCGATCGAATTTACTACAGCGAGAGATCGCTTAAACATCATATGAAATTAAAGCATACGACAGATGAAGCCGTTGAATGTGAATATTGCGGTAAGATTTGCAGTAACAAATACTACTTGGCCTCCCATATTAAAATCGTCCACAATAATGATACATGGTCGAAGTGCGATTATTGTGATAAGCAATTTAAGTCCAAGAGAAACATAAGGAGACACATTGAGTACACTCATTTGGGGATGCAACGGTACAAATGTATTGAATGCGAAACCCTTTTTAAAGAAAAGAGGAGCTTGCGTAAGCACGTAAGAACTAAGCATCCGAATTCGGCAACGTTTCCACAATGTCATATTTGCCATAAGAGATTCGAATCAGCAAAATCATGCAAAATTCACTTAAAATTGCTCCATTCTTTTAATATGAACACTCATCCATGCGATCTCTGTTCAGTTTCCTTCAGCTCCAATGAAGCTCTGGTGATACATTTGCAGACAAAGCATTTAGCTGAAGACGAAATTTACAAATGCGAAGAGTGCAACCTCGTTTTTAAAGGGCATGAGAAGTTTGAGCAGCACAATGAACTGTGCCACGTGAATTTAGTGCCGAATATAAAGCAGAAAGTATTACCTAGATGTATTATTTGCATGAAAGATTTTAGTACCAGAAAAACTCTTAAACGACACATTAAGAAGTTCCATTGTGAATTTGATGTGGACGATCTGGCGACTTTTGGATCTAGGCGTCGAGTTTTCAACGTGGAATGCGAAGACTGCATCAAAAACTTCAATGACGATTTTCATTTTAATCTATATCAGAAACTCAAACATTTACGGGACTCTGTTATTTTTACATGCGGATCATGTAATTGTCCCTATAATGCTTTGGAATACGCTATTCAGAGGTATAAGATGACTAATTTCGATGGTTTCAAGAGTAAAATGATACTTAGTGAACTTTGTACGACAGAAATGAGCGACGAAGATAGCTATTTAACTTCTGAATTTGGCGCCTTGCATAGATTAATGGAAGCTGAAAGTACGACAAGTGATATCAAGTTGGAGCGTCTAGATGAAGCTTTGTGTAGTTCTTCAATTGATATTCAAGGACTACATGCAGACGTAGATATTAAAGATGAACCTATGTCTCCATAA
- Protein Sequence
- MYSSQLDFVCDYCSRSFTRKYNLQTHIENCHINSTCYCEICEQTFGSPAGLQLHLTRGHNRYGLPLPECDLCGRIFTRKQNIMSHMMTVHLQGLGPQIRCRLCGKSFTTERNLKRHLNQLHNPNVEYPTCDECNKVFKGKHSLIVHIQTMHTSTVRGIIKCHLCDKVYTNNRNLKRHIEMFHGERGEFKCDICPKVYTSNQSLRRHSRTRHNTDNQEQYKCDFCPKIIFGKDNLDSHTQVYHRQDSPNDDLEMKDSDITCDSCGRSFEEEPQLRQHVKLEHSFKTFYKYCRKSLLKQYGGGGDIHFYNCEFCNIAFTTVYELKDHMRANHDIEYNLSTCNVCFNKFYSKEIMIEHKKICIPPANVNSCSHCDKLFTDISSLEFHVRIFHPQAQIADSNITSTNYEEVLDGSYKCVHCDRIYYSERSLKHHMKLKHTTDEAVECEYCGKICSNKYYLASHIKIVHNNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFSSNEALVIHLQTKHLAEDEIYKCEECNLVFKGHEKFEQHNELCHVNLVPNIKQKVLPRCIICMKDFSTRKTLKRHIKKFHCEFDVDDLATFGSRRRVFNVECEDCIKNFNDDFHFNLYQKLKHLRDSVIFTCGSCNCPYNALEYAIQRYKMTNFDGFKSKMILSELCTTEMSDEDSYLTSEFGALHRLMEAESTTSDIKLERLDEALCSSSIDIQGLHADVDIKDEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417073;
- 90% Identity
- iTF_01252033;
- 80% Identity
- -