Aeph003665.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- litaf_3
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000018.1:3595280-3596785[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-22 2e-19 69.8 13.9 2 69 131 202 130 203 0.85
Sequence Information
- Coding Sequence
- ATGACCGAAAGAGATTCAGAGGATGAAGTTTTCGATGATTTCGAACCACAGTTAGAAGAAAATGATGAAATTGAAGCTAGTGATGATGCGAACGTGATATTTTGCAGAATGGCTAGTATCGCGACCCCAGGTGCTTCTGCTCCCGAAGACTTACCTCCACCATATTCTTCGGTCGTTGGAAATGTACAATATGGTTTCGTAGCTCCCGCGGGTGAACCTCAACCCTCTCCAGCATATCCACACTCTCAACCTCCTAAGCAATTCACTGCACCTGGGGTATACCCGCACCCGCCCGTTGTAGTGACTAACACACAGCCTCAGATGGCGAGCCTGCCACCGCCCCCGCCTGGTGTTCCTATTGGTGTGGTCTTACCTCCTGCTGTAGGCACAGAACCCACAACAATTAATTGCTTCAATTGTGGAAAAACTGTAACAACCAGAGTTACCTATACAACAGCCTGGCATACTCATCTAGTGGCAGGTTCTGTTTGTGTTATTACTATGTTCTGTTCACTCTGCTGCCTGGGCCTAGTTCCTTACTGCTTTGATACTTTCAAAGATGCTGAGCACTACTGCCCCAACTGTAATACTTTTATTGGTAAAAGTAATAAATGTTAG
- Protein Sequence
- MTERDSEDEVFDDFEPQLEENDEIEASDDANVIFCRMASIATPGASAPEDLPPPYSSVVGNVQYGFVAPAGEPQPSPAYPHSQPPKQFTAPGVYPHPPVVVTNTQPQMASLPPPPPGVPIGVVLPPAVGTEPTTINCFNCGKTVTTRVTYTTAWHTHLVAGSVCVITMFCSLCCLGLVPYCFDTFKDAEHYCPNCNTFIGKSNKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682055; iTF_00036298; iTF_00683853; iTF_01082097; iTF_00035314; iTF_00448692; iTF_00285078; iTF_00682998; iTF_01335608; iTF_00279648; iTF_01252418; iTF_01417391; iTF_00007671; iTF_01416448; iTF_00008579; iTF_01334435; iTF_01083911; iTF_01095529; iTF_00123018; iTF_01095530; iTF_01093711; iTF_00124854; iTF_01094583; iTF_00925406; iTF_01281897; iTF_00383283; iTF_01503508; iTF_01029817; iTF_01026969; iTF_00075131; iTF_00752618; iTF_01077147; iTF_00076126; iTF_00077163; iTF_00737150; iTF_01332222; iTF_01363614; iTF_01362192; iTF_00319391;
- 90% Identity
- iTF_01082097;
- 80% Identity
- -