Alag021799.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- RPL6B
- Assembly
- GCA_031841125.1
- Location
- CM063111.1:36648104-36653213[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.9e-18 9.2e-14 52.5 10.2 1 45 30 74 30 85 0.89 2 3 8.8e-37 1.6e-32 114.0 13.1 90 192 85 187 75 193 0.95 3 3 1.2e-09 2.3e-05 24.9 0.2 267 300 183 216 180 216 0.87
Sequence Information
- Coding Sequence
- ATGGACGGTTATGCAGTCGGCGGTCGAAAAAGAGCACCAAGTAACCACGCCGTCGAGGATCAAGCTTTGGATCAAATCGCTAAGCAGGCTGAATGTCGACTGGCGGCTCGTCGTCAAGCTCGCGCCGAAGCTCGAGAAATTCGAATGCGGGAAATCGAGAGACAGCAACGAGCGGCTGGGGATAATGCCGATAAACAGTTCGATATGCAGAACGCCGTTGACTCGGCTTGTCGAATACGAACTCCGTCTAGCCAAGAATTGAAAGAATACGAAGAGAAATTTCGCAAAGCCATGATTCAAAATGCTCAATTAGATAACGAAAAATCGGCCATCGCATATCAGGTTGAACTTTACAAAGATAAATTCCAAGATCTGGAAGCAGCGTATTCAGTTCTACAGAAAGAACATAAAGATAAGTGTAGAGAACATGAACAATTGAAAAGACTGCTagtgaaacaaaaagaagattTAGCATTTTTCAGATCACAACTACAAGAACGCGATCGATTAATAGAAGAACAAGGCTTAGTTGTGATAACGAACGGAGAAGAAGATGATAACGAAGATTTCGACGAGTCAAGAGAAACTTCCAGATTAGTCGGTGATTATAAGTTTAAGTGGCAGAAAGCCGAACAAGATATTTCAACGTTACAGGCTAATagaaggaaaactcgaacaaaCCCGGTCAAAGCCGTGACTGGAGCCTTCTGCAGTGGGGGACCAAGCGGCCCTGCTGCAGTCGTAATGGACCGCAAGAACACGCAACGACGAGGCGCTGGTGGATGGGTTACGTATCGTGAAGGCATCGTAACGCTTAGGGCGACTTCAGCCGACCCGTTCACGTCCGGAAACCAGCGCCGGAAGGCTGGCCacGTGAGGCATTTTCGTTCGTCGATTACCCCGGGCACCGTTCTGATACTGCTGGCTGGTGTTAACAAAGGCAAACGTGTCATCCTGCTGAAAAATCTCGAGAGCGGATTGCTACTTGTGACCGGACCGTATCTGCTGAACGGTGTACCGCTGCGTCGAGTGCAGCAGTGCCACGTCATTGGCACGAAAACTAAATTGGACATCAGTCAAGTTCAACTGCCTGAGAAACTGAACGACAAGCTTTTTAAACGTATCGTCGAAAAGAGGAAAGTTAAGAAAGGCGACAAGACGGTGTTCATGCCGAAATTATGCCAAAAACCTTACCAGAATATGTCGAAAATAGACCAAAAACCTTACCAGAatacgttgaaaataaacaaatag
- Protein Sequence
- MDGYAVGGRKRAPSNHAVEDQALDQIAKQAECRLAARRQARAEAREIRMREIERQQRAAGDNADKQFDMQNAVDSACRIRTPSSQELKEYEEKFRKAMIQNAQLDNEKSAIAYQVELYKDKFQDLEAAYSVLQKEHKDKCREHEQLKRLLVKQKEDLAFFRSQLQERDRLIEEQGLVVITNGEEDDNEDFDESRETSRLVGDYKFKWQKAEQDISTLQANRRKTRTNPVKAVTGAFCSGGPSGPAAVVMDRKNTQRRGAGGWVTYREGIVTLRATSADPFTSGNQRRKAGHVRHFRSSITPGTVLILLAGVNKGKRVILLKNLESGLLLVTGPYLLNGVPLRRVQQCHVIGTKTKLDISQVQLPEKLNDKLFKRIVEKRKVKKGDKTVFMPKLCQKPYQNMSKIDQKPYQNTLKINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -