Alag013231.1
Basic Information
- Insect
- Acanthococcus lagerstroemiae
- Gene Symbol
- sak1
- Assembly
- GCA_031841125.1
- Location
- CM063109.1:21611192-21618182[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5 2.8e+04 -3.2 0.1 13 33 377 397 370 401 0.72 2 2 1.6e-19 2.9e-15 57.6 0.1 6 77 876 949 872 951 0.93
Sequence Information
- Coding Sequence
- ATGGTAATTATCATAATATTCTGCTTGTGGATATCGGTATCTGCAGGGGATTCGGATTCGAGTTACATTCCATCGGACTGGGTCGATCCAAGAGATATGCGGAACTACAATCGGCAGACAAAGAGTATGAAGTCACCAACTGCACAGGTGGCCGGAACAAAGGATGAGGTTATCGATAACAGTACCACTTCACGATATCTCAACGATGAAGTAGAACGCTTTCAAATATTCTTACAAAGGTTCATTAATCGTGTCTTACTGACTGCTGATTTAAAAAATAAAATAATCAAGCCTCAGACGAGAATCACCACTGAAATTCCCGTGTTAATTACCACCGAAGAATTGTCAAGATTGATCGCCCTGGGAGAACATGTTACGTCTTCGGAATTAACAGAGTtagataatttattttcctcTATATTCAATCATGAACGCGGATACAGTTTCGATGTACTAACTCCTTATTTAAATCCTGTAGAGCAGTTATTTCATAACATGACATGGGAGAAACTAACAGTCACAGTTGTCACCGTTGTCTTTGGAGTAGTGTTGTGGATGTTTGCTGTTGGGAAGAGCTTGAAAAGGATCATGATTTTCTTGTACTTGATATTTTTCATGGGTGGCTTAGCTGGGAACTGGTGGCATATGTATCAGGACGCGGTAGCTGAACATTTTgcggaagtaaaaaaattttcccatattCCGGATGTTTGTGCTCCGAAGAAAGTTTCGATATtcagttttctgttttcatcGGTCGAAGATGAGTGTAAGCAGTATCACAAGGCTTTCCAAGTTGatccgttttcaaaaattcctccATCAATTGTATTGTCGGAAACCTTGTCAATGATGTTGATTCATCCTTTAAAGTCGCTGGGCTCTGCTTTAGGCGATTTTCTGAAAGGCATTAATGGAGCAGCCCCTTGGCCACTGAGCATTGTATTTTTACCATTTGTCTACTTGACGTCTCTGGTATTcgtattcttcttctttgtcgTATGGTGCGGTATTAAACTGAATTTTTGGACTCTATTCGGTGGCATAAATATTGGAGGTCGAACGTCCGGGGAATCGAATTATCCGAAGATCAACGACGTAGCCGATTTACAAAATATGCTGGAGCATGAGAATGAACAGGAGTACATTGTCATTCGAGCGCGAACTGTAAAACAGTATCTGAATAATGTCCGAACTATAGACGATCAACTTATGTTTACAAAGCACGGCGAAGGCGATAACAGTTTGAGGTATCGTCCCGTCTACTGTAGGAACAACAGCACTGCTAGTTGCTCAGCAACTGAAGGATTATCGGGAACAGCAGTTCTGGGTCCTGTGCCTATAGTGTCTCATGCGGAGACTAATGCAATGTTGCAGTTGATGAAACATGTACCGAAACACAGGTATTTTGgtaatGATTCCATTTGGCTGCTCAAAACAGTGATTGAAAACGAAATGATGACAGCTACCACCTCGATAACACCCGACAGTCACGACGATTGTGCTAATATGTTTTACAACACCAAGAAGGAAATATTTTCAGTCATCGACTCGTGGTCAAATATTATGTTCACATTTTCAAACTACATTAATGCTTCGCTATCTTACATATATGCCAGTCATACAAGAGACCTGATTCTCAGATACGAAGACTTGCCACAGAGTATGGATATCAGGTGGCTATGCGAGGACATTTTAAAATCATCTCACCATCCTTGGTCTTTCCAGTCGAAACccgaagaagagaaaaactgTCTCTTTTTCGTCACTGAAACGCTaggtttccatttttttgacgaTGGGATTGATTTCGGCGACGAGTTTCACCTCAAATCCGAGGAGGAGCTATCTCAATTGCTCGCCGATTGGTTATTCAAAGAAAGTGTGGACGAGTTTCGAACAAACACTAAACGAGTGCTGGACTTCAATAACGACGAAGCTGGAGCTCGCATTTACGACAGAGAGAAGCTTTCAACGCTGTTTGATATGCCGATTTCAAATATAGAACATCTCATGACGTCTGCTAATGAATTTCCCGATGGATCAAACATAGCCGAAGGACCACATTATTATGTGCCGAACACATTAATCGAGTTGCAGCCGTGCACGAAAGAAAGTACAGAAGAGCGAATCGCGAAAGAGTGCGAGCAAGAGTTGAAGAGCGGATTTGATGAACACGATTCCGCAATGCTAAATAATAACGATTCGGCAACGCTGAATAACAACGATTCGGCAATGCTAAATAACAACGATTCAGCAATGCCAAGTAACAGTGATTCAATACTGCTAAATAACAACGATTCGGACGCGGATAAAAGTTTAGATATTGAAGTCAAGTTGGAAGACAGTTGCGAAAACAACAGATTGAATATTGATGACAGAGGCGACCTGAATGTGGGCAACGATAGCAAACCGAACAAGAAAACAACTAATTTTAAAGCAGTTCCTATACCAAAAACAAATATTATTAGCGGAAATCAAGTGCAGAAGACTGGAACTAGCAGTGCCCATTCGACCAAGCGGCATAGACGACGAGGAAGGCCCAGAAAAGTGGACGAATTCAATCAAGCATCTTCTAAGCACAGCCAACATAAGTACTCGCAACAGAATGTATCTGATTGCAGTACTTGGATCAGAGATAATTTCTACGAAGTGACTGGAAATAAACCAGCCATTGATCGAGCTCGTTTGTACGAATTATACACAAATTACTGTTTATTGAAATTATGCACACCCGTAGATCGGGCCTTGTTCGGTAAAATCATAAggaaagtttttccaaaattacgATCTCGCAGGCTGATACAGAAtCAAGTCTTAAAATATCACTACGTTGGCTTGAAACCGAAATTTGCAGAACTGGAGCAAATATTGTTGTATGCTGATTCATCACTGAGTCCGACTGAGGTCGTCCTAACGTACACTCCAGTGGATGACTGA
- Protein Sequence
- MVIIIIFCLWISVSAGDSDSSYIPSDWVDPRDMRNYNRQTKSMKSPTAQVAGTKDEVIDNSTTSRYLNDEVERFQIFLQRFINRVLLTADLKNKIIKPQTRITTEIPVLITTEELSRLIALGEHVTSSELTELDNLFSSIFNHERGYSFDVLTPYLNPVEQLFHNMTWEKLTVTVVTVVFGVVLWMFAVGKSLKRIMIFLYLIFFMGGLAGNWWHMYQDAVAEHFAEVKKFSHIPDVCAPKKVSIFSFLFSSVEDECKQYHKAFQVDPFSKIPPSIVLSETLSMMLIHPLKSLGSALGDFLKGINGAAPWPLSIVFLPFVYLTSLVFVFFFFVVWCGIKLNFWTLFGGINIGGRTSGESNYPKINDVADLQNMLEHENEQEYIVIRARTVKQYLNNVRTIDDQLMFTKHGEGDNSLRYRPVYCRNNSTASCSATEGLSGTAVLGPVPIVSHAETNAMLQLMKHVPKHRYFGNDSIWLLKTVIENEMMTATTSITPDSHDDCANMFYNTKKEIFSVIDSWSNIMFTFSNYINASLSYIYASHTRDLILRYEDLPQSMDIRWLCEDILKSSHHPWSFQSKPEEEKNCLFFVTETLGFHFFDDGIDFGDEFHLKSEEELSQLLADWLFKESVDEFRTNTKRVLDFNNDEAGARIYDREKLSTLFDMPISNIEHLMTSANEFPDGSNIAEGPHYYVPNTLIELQPCTKESTEERIAKECEQELKSGFDEHDSAMLNNNDSATLNNNDSAMLNNNDSAMPSNSDSILLNNNDSDADKSLDIEVKLEDSCENNRLNIDDRGDLNVGNDSKPNKKTTNFKAVPIPKTNIISGNQVQKTGTSSAHSTKRHRRRGRPRKVDEFNQASSKHSQHKYSQQNVSDCSTWIRDNFYEVTGNKPAIDRARLYELYTNYCLLKLCTPVDRALFGKIIRKVFPKLRSRRLIQNQVLKYHYVGLKPKFAELEQILLYADSSLSPTEVVLTYTPVDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -