Aori008911.1
Basic Information
- Insect
- Acanthacorydalis orientalis
- Gene Symbol
- -
- Assembly
- GCA_034766995.1
- Location
- CM068315.1:8717963-8719192[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00028 3 9.2 0.1 11 44 201 231 192 235 0.81 2 5 0.036 3.7e+02 2.5 0.4 21 43 236 258 232 262 0.86 3 5 0.00013 1.4 10.3 0.1 22 52 265 295 262 297 0.89 4 5 0.063 6.6e+02 1.7 0.1 21 45 292 316 290 321 0.87 5 5 0.00015 1.6 10.1 0.2 23 45 322 344 313 353 0.88
Sequence Information
- Coding Sequence
- atgaataaacagCAACAGGAAGCAATACCCTTTTTAAGTGTAGGCCCTAATGGCTGTATATTAATTGATGGAAAACCATCTTCTAAAGACATTCTTCAACTGAATATTGACTCAGCAGAAGTGTTGATTTTACCAAGTACAATAAATGTTGATGATACTTCAGAAATCTCAGGCGAACATTATACAATTGTTGATGAAGATGTAGAAGACATTATATCTGTTGGAGAAGACATAATTACAGAACGAGTACGAACATCACCAGCCCATGATCATGATTATAGAGAGTCCAATGCAAgagaatattatgtttatacCACACAAGATGATGGATCAACTGATGATTCTGCCAGAGTAATTGCTTTTGATTCAActgaaattgaatcaattaatgaTGGATCGTTCATAAGGTCAGAATCAACAGATGCTACTGATTTTATTGGTATGTTTGGTGTTTCAGCTGGTTACTATGATGAAAGACTTCCTCAAAATACTGTTATTCGGATAAAAACAGAACAAGATGAtagtgaatattttgaatatggAACCGATGTATCACGGTTTCTTTTCGAACGAAATGTAAAACAAGTTAATGATGATATTGGGacacaaaaaagaaaatcaaaaccTACACCATTTACTTGTCAGATATGTGAGAAATCTTTTTCCCAACAAAGCAATCTCTGGAAACATATACGAACACATACAGGAGAACGACCGTACCATTGCCCAACATGTGGAAAGAGGTTCTCTCAACGTGCCAATATGATTAAGCATCAggTTGTTCATACAGGTCAGAGACCATATACATGTAAGATATGTGAACGTGGTTTTACACAGAGAGCAAATCTGAGTAAGCATATGAGACTACATACCGGTGAAAAACCATTTCTTTGTGATTTTTGTTCGAAACGATTTACACAACGGAGCAATTTAGTTAAGCACCGATATTTACATCTTGGTATCAGACCGTATTCATGCCCGTCGTGTTTCCAGACATTCACACAACAAAGTAATctaaaaaaacatgtacttaTACATACAGATGTAAAGAAACATTTCTGTGAATATTGTAATAAAGGGTATGTGCAAAAAATTAGTGCACAAAAACACATGGAGAGATGCAAGTCAATTGATGCAACTGCTTGTTCAAGTTAG
- Protein Sequence
- MNKQQQEAIPFLSVGPNGCILIDGKPSSKDILQLNIDSAEVLILPSTINVDDTSEISGEHYTIVDEDVEDIISVGEDIITERVRTSPAHDHDYRESNAREYYVYTTQDDGSTDDSARVIAFDSTEIESINDGSFIRSESTDATDFIGMFGVSAGYYDERLPQNTVIRIKTEQDDSEYFEYGTDVSRFLFERNVKQVNDDIGTQKRKSKPTPFTCQICEKSFSQQSNLWKHIRTHTGERPYHCPTCGKRFSQRANMIKHQVVHTGQRPYTCKICERGFTQRANLSKHMRLHTGEKPFLCDFCSKRFTQRSNLVKHRYLHLGIRPYSCPSCFQTFTQQSNLKKHVLIHTDVKKHFCEYCNKGYVQKISAQKHMERCKSIDATACSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01050653; iTF_00004896;
- 90% Identity
- iTF_00004896;
- 80% Identity
- iTF_00004896;