Aori026772.2
Basic Information
- Insect
- Acanthacorydalis orientalis
- Gene Symbol
- pita
- Assembly
- GCA_034766995.1
- Location
- CM068320.1:28904592-28906434[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.4e-05 0.15 13.4 0.1 13 44 150 180 147 185 0.89 2 7 2.8e-05 0.29 12.5 0.1 21 45 185 209 181 213 0.90 3 7 3.1e-05 0.32 12.3 0.1 21 45 213 237 209 241 0.91 4 7 1.3 1.3e+04 -2.4 0.0 19 31 257 269 247 282 0.62 5 7 0.00071 7.4 8.0 0.1 21 46 314 339 301 347 0.82 6 7 0.2 2.1e+03 0.1 0.0 21 45 342 366 338 370 0.78 7 7 0.0018 19 6.7 0.0 21 43 370 392 364 396 0.82
Sequence Information
- Coding Sequence
- ATGTCATTTCccaattatgataaaatatgtcGTTCATGTTTAGGAGAAGGAGAGTTACATTCAATGTTTAGTGAAAATGCATTACCAGATTTCAAATTAGTTTTAGCTGAAATACTAATGGCATGTGCTTCTGTTAAGgTTTCTGAAGGTGATGGACTTCCTTCAAAAATGTGTGTAAATTGTGTTATTCAAGTTAAACAAGCATTTACATTTAGACAACAGTGCgagaaaaatgatgaaatattaagGTCATATAATCAACCagtttcaataaatgaaatagatACAAATTATAATGTAGAAACATGTAACAGTGATAGTGGTAATTCAAAAGAAGATATAAAAGAAGAGTTAAACATATCTTTAGATATTCCAGATCATTTATTTGAAACCAATTTTGATAGTACTAATGAAAATCATACTAACAGAACAAATGATGATATTAgAGAGCAACCAAAAACACATAATCAAGAAAAGCCATTTACTTGTGATATTTGTGGacataaattcagttttaattgtaatttacgAAGACATATGATGACACATACAGGAGAACGTCCACATCGATGTCCAATTTGTAATAAAGGATTTATTCAATCAAACAATTTAGTTAACCACATGCGTGTTCATACTGGTGAAGCtccatttatatgtaatatttgtgGTAAAGGTTTTCGTCAATCAGAGCGTTTACgttctcatttaaaaaaacataatgaacCAGATGATGTAAAAGAGAAAGAAAgtagtaaaaagaaaatatcttcaGAAGAAAATCGGActcatatatgtaaaatttgcCAAAAAGGATATTTGACTAAAGGTGCATTAAGAACCCATGCTTTAATACATGgtgataaaacatttctttgtaGTGAATGTGGAAAAGGTTTTGTTAGCAAACCATTATTACAGTCTCATAGTAAAATACATACAGGTGAAAAACCATTTGCATGTAAAATATGTTCTAAAGTGTTTACACAACGTCACCATTTAACATATCATATGAGAACCCATAGTGGAGAAAAACCTTATATGTGTTCAGTTTGTGGAAAgaacttttctttaaattgtaatttgacTGTGCATATGCGTATGCATTCAGGAGAAACACCTTATACATGTCCAGTCTGTGGTAAAGGCTTTTATGATTCAAGTAGCatgaagaaacataaaaaaggaCATGGAAATATTCCTCTTCAAATAAGAGATTTAGCAGgctaa
- Protein Sequence
- MSFPNYDKICRSCLGEGELHSMFSENALPDFKLVLAEILMACASVKVSEGDGLPSKMCVNCVIQVKQAFTFRQQCEKNDEILRSYNQPVSINEIDTNYNVETCNSDSGNSKEDIKEELNISLDIPDHLFETNFDSTNENHTNRTNDDIREQPKTHNQEKPFTCDICGHKFSFNCNLRRHMMTHTGERPHRCPICNKGFIQSNNLVNHMRVHTGEAPFICNICGKGFRQSERLRSHLKKHNEPDDVKEKESSKKKISSEENRTHICKICQKGYLTKGALRTHALIHGDKTFLCSECGKGFVSKPLLQSHSKIHTGEKPFACKICSKVFTQRHHLTYHMRTHSGEKPYMCSVCGKNFSLNCNLTVHMRMHSGETPYTCPVCGKGFYDSSSMKKHKKGHGNIPLQIRDLAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004857;
- 90% Identity
- iTF_00004857;
- 80% Identity
- iTF_00004857;