Basic Information

Gene Symbol
ARID5B
Assembly
GCA_034766995.1
Location
CM068321.1:24395400-24398464[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.3e-26 2.2e-22 80.4 0.0 2 89 139 224 138 224 0.95
2 2 6.2 2.6e+04 -3.1 0.0 19 35 458 473 453 473 0.75

Sequence Information

Coding Sequence
ATGGTATTGAGTTATCCTCGTTATTGTCGTTACAGAGCTTTAATGAAGAGGCTTGAAAATGTCGAAGATAAATGGctaaaaaattcattagtttCAATGCTCGGTGGTTTTACGTCGCCTTGCCGTAACACACgagttttattttgtaaagataCATTCGATTATCCTGATTTAGAAGGTCACGAATTACTCTGCAATCATCTTGCGCCGAAATTAAAAGGCAGACCCCGAGGTAAACGGAAAAAACGGAGCATATCACCTGGTGGATCAGAATCTAATGAATCTGAATCATCACTATCTACCACATCTACCTGTGCAAAgACAAGACTGACAACTGTTGGTGGAAGAAATGGACTTCGATGCAATACTACGACATCTCCAAGACGAAGTACAAGATCAACACAAAGTAATGAAGAAAGAGAATTTCTATCAAAACTCAATGTTTTTATGAAGTCACATCGAACACCGATAGGTCGACTTCCTTCATTGGGCTATAAAGAAAttgacctttataaattctattccAAAGTACAACGGTACGGTGGTTATGAAAAAGTAACTACTAATCGTATGTGGAAATCGATATTTGATGAACTAGGCGGTAATCATGGATGTACAAGTGCTGCTACtataataagaaaacattacgaaaaatttttactttcttttgaaagaaatattaaaaatcaagaaCGTAAATCTCAAGCAGATCGTCGtcgtttaaaaagtaaaacttCAACTAGCTGTAGCGATgctgaaaataatgaaagttcAAGTGGACATAGTACACCAGTCTCATGTCATACGCACAATAATGTTTCAAGTTCTACTTCAAGCTCTTCATCTGTAGATAGCAAGatTTTCACAGTACCTCATAAAACTAAATCTGATGGTAAAACATCTTCTCTTCGAAGTGTTCGTGTAAAACCTGACAGAATACGTGAATCTTTAAATCCAGCTAAAATTGGATCGAATACTACAATATCTTCAGTACCAGATCCTCAGaatcataaaaattgtattgttacTCCTATAACACCTTCAGTAACATTAACAGATATAACTTTACCAGTACCTGTTACACCAGTAAGTGACAGTGAATTTACTCCTGAAGCCACTACTCCAGATAAAGCACCGACCTTACAGGACACTCCTTATGAAAAAGCAGAAGgtgaaaaaatatcagatatatCACAGGAAAAAGATAAACAACAAAATTGTCAAAGTCCAAAATCTAtacctaataattataaaaaagacatttcACATGATAGTCAATGTAAAAAAGTAGAAATTCGACCAAGAACTGATTCAcctgaaataattgatttagaaGCAGAAGATGACCCTgtcattgaaacaaatattattcctATAATGCTTCCAGAAGTAAAAAAAAGGAAActagatatattaaaagaagGTGGTTTGGAAGTCACGGCGGTATCTTCAGCCTCCAGTAACACTCCTCAACACAATGACAGCAGGCCCTCTGTGATTCATCAGTTTAGTGTTCCTGAAGAGCCTGTTAAAAAGGCATTGACTTCATTGATGCCTACTAAAGAACGGTTATCTACGTCAGCGAGATTTCAACATAAAATCTTACACACGCCCAACCTATTTGCACAGACTTGTAAAACATTGGATCATCGACCACCCTTCAAATCAGCGTCTCGTAGTGCTTCTTTTACTGATGGTCAGATACCTCCGAAAGTCATTCAGTCGCGTTCCATTTACAGTCGTTCGCATACGACTGTATATGGAAATCCTAAAGATCCCTTTATGCCACCCCCACTTACTACACAACTGCCAAGacatataattcaaaatgtcTCAAAGTCACCTAGCAGTGAAGTATTagatttaacaataaaaacctCACAAAAACCTGTAGTGGAAATAATGCGAGTACCTAATGTGCCTTTGCCTATGTCTCATGCATcctttaaagaaaaatctgtgaaatcattcaataaaaatcatgttTCCGGTTTACAAATGATTGACGGAAGAGTAGTCGGATCAAATTTAGAAATCACTCTAGTTGAAAATCCAAAATCGACACAGAAAGTTCCCTTCACACCACAAAAAATTCCCATCCCTTCATCTTATCACAAACATCCACAAAAACGATCCGCGTCTGGAAAGTTCATGTCGAATAAATCGCACGACGTCAGAATAGAGAATGGGAAATCTCTGAATCGATCGTTAACGATACCGACGTATCCGTCGAACATCGACAGAAACGGATCTACCTCGGCTAGTGCCGATCTTGTGATTCCGACGGTTCCCCATTTATCTAATCGCAATAGCATTCCGAAAATAGATGATCTTGCGAGACTTAAACAGGAAACTATACATTCAAATACCAACTCATTCCATCCTGCTGGATCTCCTGTATTTCCCAATTTTATGCCCCATCTTCCTAATGTGTCCTCAAAAAATccatatttacaaatgttagaTCCTATTTATTATTCTGCTTTGGCTCaagaattatattcaaattcaatGCCTATGACAGCGACTTCTATGTTTCCTCAAGCGACGAGCGAACAGTTGCAgctatataaacaattaatgacGAACAGTAGCCGACTTAGATTTCAATTTCCAAATTTGTTACCGGAAACATCGGCTTCGATTACTTCTGTTGGCCAAACGCCTAGCAACAAATCTAAAAACtaa
Protein Sequence
MVLSYPRYCRYRALMKRLENVEDKWLKNSLVSMLGGFTSPCRNTRVLFCKDTFDYPDLEGHELLCNHLAPKLKGRPRGKRKKRSISPGGSESNESESSLSTTSTCAKTRLTTVGGRNGLRCNTTTSPRRSTRSTQSNEEREFLSKLNVFMKSHRTPIGRLPSLGYKEIDLYKFYSKVQRYGGYEKVTTNRMWKSIFDELGGNHGCTSAATIIRKHYEKFLLSFERNIKNQERKSQADRRRLKSKTSTSCSDAENNESSSGHSTPVSCHTHNNVSSSTSSSSSVDSKIFTVPHKTKSDGKTSSLRSVRVKPDRIRESLNPAKIGSNTTISSVPDPQNHKNCIVTPITPSVTLTDITLPVPVTPVSDSEFTPEATTPDKAPTLQDTPYEKAEGEKISDISQEKDKQQNCQSPKSIPNNYKKDISHDSQCKKVEIRPRTDSPEIIDLEAEDDPVIETNIIPIMLPEVKKRKLDILKEGGLEVTAVSSASSNTPQHNDSRPSVIHQFSVPEEPVKKALTSLMPTKERLSTSARFQHKILHTPNLFAQTCKTLDHRPPFKSASRSASFTDGQIPPKVIQSRSIYSRSHTTVYGNPKDPFMPPPLTTQLPRHIIQNVSKSPSSEVLDLTIKTSQKPVVEIMRVPNVPLPMSHASFKEKSVKSFNKNHVSGLQMIDGRVVGSNLEITLVENPKSTQKVPFTPQKIPIPSSYHKHPQKRSASGKFMSNKSHDVRIENGKSLNRSLTIPTYPSNIDRNGSTSASADLVIPTVPHLSNRNSIPKIDDLARLKQETIHSNTNSFHPAGSPVFPNFMPHLPNVSSKNPYLQMLDPIYYSALAQELYSNSMPMTATSMFPQATSEQLQLYKQLMTNSSRLRFQFPNLLPETSASITSVGQTPSNKSKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01050172;
90% Identity
iTF_01050172;
80% Identity
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