Ater013387.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002555.1:3256168-3260584[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.64 1.6e+03 -0.5 0.0 26 45 189 208 186 214 0.84 2 7 0.0024 6 7.3 0.0 23 46 324 347 319 353 0.86 3 7 0.017 45 4.5 0.0 21 48 350 376 346 379 0.88 4 7 0.045 1.2e+02 3.1 0.0 23 47 408 432 401 439 0.82 5 7 0.2 5.2e+02 1.1 0.0 21 43 434 456 426 462 0.83 6 7 0.0083 21 5.5 0.0 21 49 462 490 455 493 0.85 7 7 0.0099 25 5.3 0.0 21 43 490 512 488 517 0.90
Sequence Information
- Coding Sequence
- ATGGAAGAAAGTTTAAAGGTAAATGTTTGTCGGGCTTGTCTCGCCGAAGAAGGAGAGTTTCAATCGGTATTTGTGTCCGACGAAAATAGCGGTTTATCAATACATTTAGCAGAAATGATAATGGCGTACACTTCACTTCagATCACAGTAGGAGATGGATTACCAGAACAAATTTGTTCGAACTGCGCTAAAACGGTCGtccacttttatttatttaaacaacaatgCGAAGAATCCGATTCGGCTTTGCGTGACCAGTTAAATAAatctacaaataaaatgtataaaatcaCCGAGGAACAAAGATTGGCTGCGGAGGCTTTAAACATCGATCCGTATTTATTGGACGTTGTTATAAAACCTGAAATTAGTGAAGAATCATCTTTGCCTCCAGTAAGTTTAGAAGAAACGTTTGACGTAAGTTTTTCAATGAACGATAATGGATCAGAAGTAGAGGAAGTAGATACTAAAGATAATATGGAAAGTGATGTATCTCTTGAAGTGTATACTCAAACAAACCATGTGAATAAACTTGTGAAAAACTATAAACCAATAGAGATGTTTGTTTGTGATATTTGCAATAAGAGTTTTTCTCATAGCAAATTACTTCTTCGCCATCAAGCGATGCATGAAGTCAAGGCAGAAGTGAAAGTACCAATTGAGAATGTGATGGAGGACGAGTGCggtgttgatattttaatagaaGAAAAGTTTAATCCTATAGATTTATGTTGCTTACATTGTAACaaagagtttttaaacaaagaagagTTTGAAGCTCACGTTAATCAAGACATAAcactagaaaatttaaaatgtcaaatgaGGAACAAATATTTCAGTAAGCCTTCGCATCTGAAACGCCATAAGATGCAGGATACTGTAAAAGGATACATTTGTAAACTATGCAACAAAGGATTTGCTAGGAAGGAGCAACTTGTTAATCATATGAACACTCATTCTGGAATTAAACCTCACGTTTGCAATATCTGTAGTAAAGGTTTTAATCAAGTATCCAACTTGAGGGATCACATGAGAACACACAATGGAGAAAAACCCTTTTTATGTTCGACTTGCGGAAAAGGCTTCAATCAACTAGGAAATTTGCGTCAACACATTATCAGACACAGTGGAGTTAAAGCCCATTTATGCAGTACATGTGGGAACGGGTTTGCTAGTAAAGGCGAGTTGTGTGCACACGTGCGAAAACATACAGGAGCAAGACCGTTCGTATGTCCTGTTTGCAACCATGGCTTCACCACTTCCAGTTCATTAACGAAACACAAACGAATTCATTCGGGCGAAAAACCTTATGAATGCGAAGTgtgcaaaatgaaattttcacgATCTGGTATTCTTGCCAGACACAAACGCACGCACACGGGAGAAAAACcttatatttgtaaattttgtactaAAGGATTTTCACAATCGAACGATCTCAGTTCTCATTTAAGGATTCATACGGGCGAAAAGCCTTATATTTGTGATACTTGTGGTCAAGCATTTAGACAAAGTTCTGCtttaaaaagtcataaaaaaacTCACGTCGACCGTTCCCCAATctatgaaattgaaaaacagcGAAATATTGTTCCATTAGcgagaaataattttcttaacgtAATTCCATGA
- Protein Sequence
- MEESLKVNVCRACLAEEGEFQSVFVSDENSGLSIHLAEMIMAYTSLQITVGDGLPEQICSNCAKTVVHFYLFKQQCEESDSALRDQLNKSTNKMYKITEEQRLAAEALNIDPYLLDVVIKPEISEESSLPPVSLEETFDVSFSMNDNGSEVEEVDTKDNMESDVSLEVYTQTNHVNKLVKNYKPIEMFVCDICNKSFSHSKLLLRHQAMHEVKAEVKVPIENVMEDECGVDILIEEKFNPIDLCCLHCNKEFLNKEEFEAHVNQDITLENLKCQMRNKYFSKPSHLKRHKMQDTVKGYICKLCNKGFARKEQLVNHMNTHSGIKPHVCNICSKGFNQVSNLRDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHIIRHSGVKAHLCSTCGNGFASKGELCAHVRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECEVCKMKFSRSGILARHKRTHTGEKPYICKFCTKGFSQSNDLSSHLRIHTGEKPYICDTCGQAFRQSSALKSHKKTHVDRSPIYEIEKQRNIVPLARNNFLNVIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003967;
- 90% Identity
- iTF_00003967;
- 80% Identity
- iTF_00003967;