Ater013054.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002542.1:56007-58010[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.021 53 4.2 0.0 22 45 165 188 160 192 0.88 2 8 0.03 77 3.7 0.0 22 45 221 244 213 248 0.85 3 8 0.079 2e+02 2.4 0.0 22 45 277 300 269 303 0.84 4 8 4 1e+04 -3.1 0.0 22 43 332 353 330 358 0.68 5 8 0.0045 12 6.3 0.0 20 45 425 450 418 454 0.87 6 8 0.0068 17 5.8 0.1 21 49 482 509 474 513 0.81 7 8 0.11 2.8e+02 1.9 0.0 22 45 539 562 533 571 0.84 8 8 0.27 6.9e+02 0.6 0.1 29 47 606 624 588 627 0.61
Sequence Information
- Coding Sequence
- ATGGCTGTGTCGTCGTCCACAATTTgtttaggaaaaattaaacaagaagtGAAATTCGATTCAAACAACGATTTACTATCAGTTGAGTTTCCTTCTCGAGATGATACTGGTGACGGACACCGACCGATCAGTCATGATGAAAGCGTACACTTTGTTAAGCAAGAAATTAAAGAGGAAGATTATATTAAGTCGGAGGAAATTATCGAACACGATTCGGTTTCATTTAAAACCGATGTTTCGTGCATTGTACTGTACTGTCATCATTGCGATTATGCGACCGacgacaaacaaattttaaccgATCATGTTATCGGTCATCGTGGTGATCAATGTGATGATTCTGTATGCGACCGAGGTATAGATCTATGTACAACTGCGGATACAGCACAAGATCACGAACATTCACGCGAACGTAATTTTcgctgcgacaaatgcgatttCAAGACGTACACCAAATCCCTTTTGACGAGTCACAAAATAGTACATTCGGAAGATAAACCGTTCAAATGCAACACATGCGATTTCACCACCAAACGTTCGTGTAACTTAAAAGAACACTTGAAGAAACACGTCGGCGAACTTAATATCGGTTGCGACAAGTGCGATTTCAAGACTTATTCCAAATCCCTTTTGATAAGTCACAAACGAGTTCATTCTGATGataaaccgtttaaatgcaACTTCTGCGATTTCACCACCAAACGTTCGTCCAACATAAAAGAACACTTGAAAAAACATGCCGGGGAACGTAACGTTGGTTGCGACAAGTGCGATTTTAAGACTTATTCTAAATCGATCTTGACGAATCATAAAAAAGTTCATTCAGaagaaaaacgatttaaatgcaatttgtgtGAATTCACTAGTAAACGctcgaataatttaaaactgcaCTTACAGAAACATTCGGGATGTAATTTTAGCTGCGACGTGTGCGATTTTAAGACGTATTGGAAATCGAGTTTGGCGAGGCATACGAAAGTCCATTGTGAAGAAAAACCgtataaatgtaatttgtgcGATTTCTCTAGCGAAAACCCTGGTGCTTTAAGAGAACACGCGAATTCACATTTTAATGAATACAATCTTAGCTGCGACAAATGCAATTTTAAGACTTACTCTAAAAGCATTTTGACGAGTCACAAACGACTTCATTCCGAAATGATTTCGGACCAGTTAAAAACGCACTTGCCGAAACGAaattttagctgcgacaaatgcgatttCGAAACGCATTACAAATCGATTTTGAACAGTCACAGAAAAGTTCATTCCGAAGAACAACCGTATAAATGCAATCTGTGCGATTTCGTTGGTAAATATTCGGGTCACTTAAAAGGACACTTGAATTCGCATTTGaatgaatgtaattttatcTGCTATAAATGCGATTACAAGACGAACATTAAAGGCAAATTGGTAAGTCACATGAGAGTTCATTCcgaagaaaaaccgtttaagtgCGATTTGTGTGATTATACTAGTAAACGTTCGgctaatttaaaaacacattcgGACAAACACTTTTGTGCGCGTAATCTCGGTTGCGACAAGTGCGATTTCAAAACCGGCAGCAAAAGAAGCTTATGGAATCACAAAAAAGTTCATTCCGACGATAGGCCGTTCAAGTGTAGTTTGTGTGATTTCAGTAGCAAACGCTCGGAcaacttaaaaatacatttcaatcaGCATTTGTCCGAACGTAATTTCGGCTGCGACAAATGCAATTATAAAACgaacactaaaataaaattgacgtaTCACAAAAGGGTTCATTCTGACGAAACGCCGTTTCAGTGCGATTCGTGCGACTTCACCTGTAAATACTTGGTTCAGTTTAAAAGACATTTGCAGAAGCATTTGGATAAACGTGTTTTATCGGAATAA
- Protein Sequence
- MAVSSSTICLGKIKQEVKFDSNNDLLSVEFPSRDDTGDGHRPISHDESVHFVKQEIKEEDYIKSEEIIEHDSVSFKTDVSCIVLYCHHCDYATDDKQILTDHVIGHRGDQCDDSVCDRGIDLCTTADTAQDHEHSRERNFRCDKCDFKTYTKSLLTSHKIVHSEDKPFKCNTCDFTTKRSCNLKEHLKKHVGELNIGCDKCDFKTYSKSLLISHKRVHSDDKPFKCNFCDFTTKRSSNIKEHLKKHAGERNVGCDKCDFKTYSKSILTNHKKVHSEEKRFKCNLCEFTSKRSNNLKLHLQKHSGCNFSCDVCDFKTYWKSSLARHTKVHCEEKPYKCNLCDFSSENPGALREHANSHFNEYNLSCDKCNFKTYSKSILTSHKRLHSEMISDQLKTHLPKRNFSCDKCDFETHYKSILNSHRKVHSEEQPYKCNLCDFVGKYSGHLKGHLNSHLNECNFICYKCDYKTNIKGKLVSHMRVHSEEKPFKCDLCDYTSKRSANLKTHSDKHFCARNLGCDKCDFKTGSKRSLWNHKKVHSDDRPFKCSLCDFSSKRSDNLKIHFNQHLSERNFGCDKCNYKTNTKIKLTYHKRVHSDETPFQCDSCDFTCKYLVQFKRHLQKHLDKRVLSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004052;
- 90% Identity
- iTF_00004052;
- 80% Identity
- iTF_00004052;