Ater010931.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002424.1:375504-378838[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0095 24 5.3 1.7 12 45 166 200 157 208 0.73 2 16 0.27 6.9e+02 0.7 0.0 21 44 232 255 228 260 0.86 3 16 0.064 1.6e+02 2.7 0.1 21 45 288 312 285 325 0.88 4 16 0.061 1.6e+02 2.7 0.0 21 44 344 367 339 376 0.87 5 16 0.063 1.6e+02 2.7 0.0 21 44 400 423 396 432 0.87 6 16 0.063 1.6e+02 2.7 0.0 21 44 456 479 452 488 0.87 7 16 0.063 1.6e+02 2.7 0.0 21 44 512 535 508 544 0.87 8 16 0.063 1.6e+02 2.7 0.0 21 44 568 591 564 600 0.87 9 16 0.063 1.6e+02 2.7 0.0 21 44 624 647 620 656 0.87 10 16 0.063 1.6e+02 2.7 0.0 21 44 680 703 676 712 0.87 11 16 0.063 1.6e+02 2.7 0.0 21 44 736 759 732 768 0.87 12 16 0.063 1.6e+02 2.7 0.0 21 44 792 815 788 824 0.87 13 16 0.063 1.6e+02 2.7 0.0 21 44 848 871 844 880 0.87 14 16 0.061 1.5e+02 2.7 0.1 21 45 904 928 900 942 0.88 15 16 0.062 1.6e+02 2.7 0.0 21 44 960 983 955 992 0.87 16 16 0.063 1.6e+02 2.7 0.0 21 44 1016 1039 1012 1048 0.87
Sequence Information
- Coding Sequence
- ATGGCACAAACCACAATTTcctgtcaaatttgtttaaaagaaataagggAAGGAATCTTAAACAACGACCCTAAATTTACGAGCTTTCCCATAAAAACTGAATTGACGTTTGATGAAAATCCACTTGCTTGCGACGAATGCAAGAACAAAATTGATGAAGAACATCTGAGCTTTATGCAtaacgaaaacattttaaaaactgaaaatctaTCACAATCTGTTTCGACAAACTTCTCTTTGGAAGaaaatttcgtaaaaactaTCAAAGATGAGTCTGTCGAAGTTacagttaaaaatgaaaatacggTAACGGaagaatatatattatttaacaagGATATGTCGTACTATTGTCAACAATGTAATTACGCTACCagcgataaacaaaaattaaccaatCACATATTTACTCATCAATACGAATGTAAACTGTGCAGCTACTCTACGTTCAATCAATCGTCATTAGATGAACACAGAAAAGTACACAGCAGTTGTACTCAATCTCGGCACAATAGAATACGTactaaagaaaaaccgtttaaatgtaatttttgtgattattgttgCAGTGTATCGAGCAACCTGAAAAGGCATATATACAAACATTCTGGTGTGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgctataaaagtgatttatctcagcacaataaaatacacactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagCCGTGCCGGCGACCTGAAGAGACATCTGTACAAACATTCTGGTGAGAAACGTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCTGTGATATGTGTGACTACAGGTGTTGCaataaaagtgatttatctcagcacaataaaatacacactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCTGTGATATGTGTGACTACAGGTGTTGCaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgattattgcagcagACGTGCGGTCAATCTGAAAACgcacatgtacaaacattctggAGAGAAACCTTTCGGCtgtgacaagtgcgactacaggtgttgcaataaaagtgatttatctCAGCACTATAAAATACACactaaagaaaaaccgtttaaatgtaatttttgtgatagactaatattaaggtgtagaataaagaaataa
- Protein Sequence
- MAQTTISCQICLKEIREGILNNDPKFTSFPIKTELTFDENPLACDECKNKIDEEHLSFMHNENILKTENLSQSVSTNFSLEENFVKTIKDESVEVTVKNENTVTEEYILFNKDMSYYCQQCNYATSDKQKLTNHIFTHQYECKLCSYSTFNQSSLDEHRKVHSSCTQSRHNRIRTKEKPFKCNFCDYCCSVSSNLKRHIYKHSGVKPFGCDKCDYRCCYKSDLSQHNKIHTKEKPFKCNFCDYCSSRAGDLKRHLYKHSGEKRFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDMCDYRCCNKSDLSQHNKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDMCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDYCSRRAVNLKTHMYKHSGEKPFGCDKCDYRCCNKSDLSQHYKIHTKEKPFKCNFCDRLILRCRIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003928;
- 90% Identity
- iTF_00003928;
- 80% Identity
- iTF_00003928;