Ater015726.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002692.1:111471-116725[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.7 7e+03 -2.6 0.0 22 36 47 61 43 68 0.77 2 8 0.45 1.1e+03 -0.0 0.0 21 44 293 316 285 324 0.85 3 8 0.51 1.3e+03 -0.2 0.0 17 45 328 353 313 357 0.70 4 8 1.8e-05 0.045 14.1 0.0 21 46 385 410 379 413 0.90 5 8 4.6 1.2e+04 -3.3 0.0 24 45 444 465 441 467 0.77 6 8 0.00019 0.49 10.7 0.0 21 45 497 521 491 524 0.90 7 8 0.002 5.1 7.5 0.0 21 45 553 577 545 580 0.89 8 8 1.1 2.8e+03 -1.3 0.2 25 45 613 633 603 637 0.72
Sequence Information
- Coding Sequence
- ATGACCGAATTTGCAACATTTACATGCAACTTTTGTCATTTAGAAGACATCAAACCAGATGTCAAATCAAATCCGAACAACGACTTAGTACCGAACTTCAAGTTGGAATTATCTTCCGAAGATgctCTAAGCATCAATCAAAATCCAGTCGCTTGCGACAAATGCAAAGCTGAGATCGACGAAACTTATCGACTTCATATGCAAAACGAGAATCTCATTAAAGAAGAATTTGTATTAGACTCGATTAAGATGGAGGTATTTGTGGAAGAGGATATACCTTTGTCCATTTCGgTTCCGTGCATGGAGGATCCAGTCGCAAATAACCGAATTAAGATTGAAATTGACGAAACACATCAATCGTACATGCCAAACGAGAGTGTACTACAGCTTCttgttaaagaagaaattaaacgGGAAGATTCAATTAAGACGGAGGATATTATTGATGATGAATGCGTGTCGTTTAACACCGATATGCCTTTGTGCGTTGAAGAATGTGTTCCGGTAAATATTGTTTACTGTTACGAATGTAATTACGGCACCAACGATAAACGAAATTTAATCGATCATGTTTTCGCTCATCGCTTCAAATGTAACCGGTGTAATTATACGACTTTCCATAATTCTATGTTAAACAATCACATACAAAGTCACCTGGTCGCCGACTCAGAGATTTCTAACAATGACGTGAAATATGAAAggtcaaaatgtttaaatagaaaaattgctaatttaaatgaaaccgAGTCGATGCATCGTGCAGACACGAACACCAAGTTGAAAAATCACTCTGGTAAAGGTCTTTTTTCCTGCTACAAATGCgactataaaacaaaatacaaatataatttgaagaGTCACGAAAAGGTTCATTCTGAagagaaaccgtttaaatgtaattcttGTAATTACAGTACAAAACActcgtttcatttaaaaaaacatacgaaGAAACATTCAGGTGAACATAAAAAAGTTCATTCTAAAGAAAAGTCATTTAATTGCGATTTATGCGATTACAGTGCTAGAGACgcgtttgaattgaaaatacaCTTGAAGAGACATTCTGGTGAACGTGATTAtaactgcgacaaatgcgattacaaaacttatACCAAATCCGAGTTGAACGCTCACCAAAAAGTACACTCCAacgaaaaaccatttaaatgcagTTTGTGCGACTACGGCAGTAAACGCTCGCGcaacttaaaaaaacacttgGAGATACATTCgggtgaaaataattttagctGCGACGAATGCGACTACAAAACCTACTCGAAAAGATTGTTCCTCAGtcacaaaaaagttcattttaaagaaaagtcaTTTAATTGCGATTTATGCGATTACAGTGCTAGAGGCgcgtttgaattgaaaattcaCTTGAAGAGACATTCGGGTGAACGTGATTAtaactgcgacaaatgcgattacaaaacttatACCAAATTCCGGTTGACCGCTCACCAAAAAGTACACTCCAacgaaaaaccatttaaatgcagTTTGTGCGATTTCGGCAGTAACCAATCGCGCGGCTTAAAAAGACACTTGAAGAAACATTCGGGGGGACGTGATTATAACTGCGAaaaatgcgattacaaaacttatACCAAATTCGAGTTGACCAATCACCAAAAAGTACACTCCcacgaaaaaccatttaaatgcagTTTGTGCGATTTCAGCAGTAAACGCTCGCGcgctttaaaaaaacacttgaaGGAACATTCGGGGGAACGTAATTATAAatgcgacaaatgcgactacaGAGCTTACTTCAAGAGCTATTTGATGTCGCATCGAAGAGTTCATTCCGAAGATAAATCGTTCAAATGCAGTTCGTGTGATTACAGCGGTAAACGTTCgggcgatttaaaaaaacatttgaagagACATTCGTGCGAACGCAATTGTACGGAAGTGAGAGGGGGAAAGGAAGTAATCGgctaa
- Protein Sequence
- MTEFATFTCNFCHLEDIKPDVKSNPNNDLVPNFKLELSSEDALSINQNPVACDKCKAEIDETYRLHMQNENLIKEEFVLDSIKMEVFVEEDIPLSISVPCMEDPVANNRIKIEIDETHQSYMPNESVLQLLVKEEIKREDSIKTEDIIDDECVSFNTDMPLCVEECVPVNIVYCYECNYGTNDKRNLIDHVFAHRFKCNRCNYTTFHNSMLNNHIQSHLVADSEISNNDVKYERSKCLNRKIANLNETESMHRADTNTKLKNHSGKGLFSCYKCDYKTKYKYNLKSHEKVHSEEKPFKCNSCNYSTKHSFHLKKHTKKHSGEHKKVHSKEKSFNCDLCDYSARDAFELKIHLKRHSGERDYNCDKCDYKTYTKSELNAHQKVHSNEKPFKCSLCDYGSKRSRNLKKHLEIHSGENNFSCDECDYKTYSKRLFLSHKKVHFKEKSFNCDLCDYSARGAFELKIHLKRHSGERDYNCDKCDYKTYTKFRLTAHQKVHSNEKPFKCSLCDFGSNQSRGLKRHLKKHSGGRDYNCEKCDYKTYTKFELTNHQKVHSHEKPFKCSLCDFSSKRSRALKKHLKEHSGERNYKCDKCDYRAYFKSYLMSHRRVHSEDKSFKCSSCDYSGKRSGDLKKHLKRHSCERNCTEVRGGKEVIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004000;
- 90% Identity
- iTF_00004000;
- 80% Identity
- iTF_00004000;