Ater014097.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002587.1:48778-50326[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0068 17 5.8 0.0 21 37 2 18 1 22 0.89 2 7 0.17 4.3e+02 1.3 0.0 22 45 222 245 218 248 0.88 3 7 0.22 5.7e+02 0.9 0.0 25 50 253 277 246 281 0.78 4 7 0.0013 3.2 8.1 0.0 22 45 306 329 298 334 0.87 5 7 0.54 1.4e+03 -0.3 0.0 23 45 363 385 354 388 0.83 6 7 3.8e-05 0.096 13.0 0.1 25 45 421 441 414 445 0.86 7 7 0.088 2.2e+02 2.2 0.0 21 45 472 497 461 499 0.84
Sequence Information
- Coding Sequence
- atGAGTGAATTCACAACCACGTGCACAATTTGTTCAGGAATAATTAAGCAAGAAGTGAAGTTTGAAATAAACGATGATGTGTTACCGAACTCCAAGTTGGAATTTTCGATGGAAGACggTCTAAGCGTCACCGAAAACCAACTCGCCTGCAACAAATGCACGACCGAGATCAAATTGTATCCGGATATTGTTAAAGAGGAGTTTGTCGAAACCACCGTCAAGACTGAAGAAAGCGTTCCGGTAAATATTCTATACTGTTACTACTGTAATTACGGCACTAACGACAAACAAAATCTGACCGAACACATTTTTACTCATCGTTTCAAATGTAATCAATGCAATTCTTTATCAATAAAGCTTCAGTCGTTTAGTACAAATGAAGAATTATCGGAAACaagcaaaaatttattcaaatgtcACGATTGTGTTTATAAGGCAAACAGCAAAATTTGTCGCATGACGAAGCGCTTAAATGGACAAAAGGCACATACAGGagagaaaacatttaaatgcgatttgtgtgattttcaaaataagtattcGAGTTCTTTAAAAATCCACATGCTTAAACACACTGGCGATTATCTCTTTGCCTGTGACGACTGCGACTACAAAACGTACACCAAAAGCCAATTGGTACAACATCACGTAGTTCATTCGGAAGACAAACCATTTAAGTGCGGTTTGTGCGATTTCACAACTAAACGTTCGAATTACTTAAAAGTGCATTTGAATAACCATTCGGGTGAACATAAATTTAACTGCGGCTTGTGCGATTTCACCACCACCTACCcgcgcaatttaaaaaatcacgtGAATAAACATTTGGGTAAACATAATGTtagctgcgacaagtgcgaGTACAAAACGTTCTCCAAATTCATGTTGACGAGACACCAGATAATTCATTCCGAACATAAACCGTTTAGTTGTAGTTTGTGCGATTTCACCACTAAATACTcgcgcaatttaaaaaatcacgtCAACAAACATTTGGGTGAACTTAAATTTAGttgcgacaaatgcgactacaaaacgTACTCGAAATTCACGTTGACGAAACACGAAAAAGTTCATTCCGAACTTAAACCGTTTAGCTGCAGTTTCTGCGATTACACGAGTAAACATTCGTTCAGTTTAAAAGTGCACTTGAATAAACATTCGGACGAATGTAAGTTTAGTTGCGATAAGTGTGATTACAAAACGCATTGCAAATTTCACTTGACGAgacacaaaataattcattccGAACATAAATCGTTTAGTTGTAGTTTGTGCGATTTCGTCACTAGACACTcgcgcaatttaaaaaatcacctAAATAAACATTCGGGCGAATATAAATTTGGTTGCGACAAGTGCAACTATAAAACGTACTCGAAACACACGCTGACGAAACACAAGAAAGTTCATTCCGAATATAAACCGTTTAGCTgtagtttttgtgattttaccAGTAAATATTCGTTCAACTTAAAAGTGCACTTGAGTAAACATTAG
- Protein Sequence
- MSEFTTTCTICSGIIKQEVKFEINDDVLPNSKLEFSMEDGLSVTENQLACNKCTTEIKLYPDIVKEEFVETTVKTEESVPVNILYCYYCNYGTNDKQNLTEHIFTHRFKCNQCNSLSIKLQSFSTNEELSETSKNLFKCHDCVYKANSKICRMTKRLNGQKAHTGEKTFKCDLCDFQNKYSSSLKIHMLKHTGDYLFACDDCDYKTYTKSQLVQHHVVHSEDKPFKCGLCDFTTKRSNYLKVHLNNHSGEHKFNCGLCDFTTTYPRNLKNHVNKHLGKHNVSCDKCEYKTFSKFMLTRHQIIHSEHKPFSCSLCDFTTKYSRNLKNHVNKHLGELKFSCDKCDYKTYSKFTLTKHEKVHSELKPFSCSFCDYTSKHSFSLKVHLNKHSDECKFSCDKCDYKTHCKFHLTRHKIIHSEHKSFSCSLCDFVTRHSRNLKNHLNKHSGEYKFGCDKCNYKTYSKHTLTKHKKVHSEYKPFSCSFCDFTSKYSFNLKVHLSKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00004161;
- 90% Identity
- iTF_00004161;
- 80% Identity
- iTF_00004161;