Ater013046.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002542.1:2461-4204[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.023 59 4.1 0.0 21 37 2 18 1 23 0.88 2 9 0.86 2.2e+03 -1.0 0.0 23 45 176 198 168 204 0.80 3 9 0.96 2.4e+03 -1.1 0.0 22 45 231 254 228 258 0.87 4 9 0.027 69 3.9 0.0 25 45 262 282 243 287 0.87 5 9 0.004 10 6.5 0.1 22 45 315 338 307 345 0.84 6 9 0.058 1.5e+02 2.8 0.0 23 45 372 394 361 397 0.83 7 9 0.0008 2 8.8 0.0 22 45 427 450 423 459 0.90 8 9 0.67 1.7e+03 -0.6 0.0 22 44 483 505 467 508 0.77 9 9 0.0015 3.9 7.9 0.0 22 45 539 562 531 564 0.89
Sequence Information
- Coding Sequence
- ATGAGTGAATTCACAACTACATGCAGAATTTGTTTAGGAACTATTAAGCaagaagtaaaatttgaaataaacaatgaaCCGAACACCAAGTTGGAATTTTCGATGGAAGACGGTGTAACCGTTAACGAAAACCAACTCACCTGCAATAAATGCATGATTGTGTATTCGAATGTTGTTAAAGAGGAGTTTGACGAAACCTGTATCAAAACCGAGGAAAGTGTTAACTGCGACATGCCTTTGTGCGTTGAAGAAAATACTCTATACTGTTACAACTGTAATTACGGCACTAACGACAAACGAAATCTGACCGAACACATTTTCGATCAtcgttttaaatgtaatcaGTGCAATCGCACAACTTCtgataattctttattaataattcataaacAGATAGTTCATTCGAAAGAATTTATCGGTAAATACTCGCACTCGGGCGGACATAAGTTTAACTGCGACATGTGCGACTACAAAACTCCCATTAAATCTAACTTAAAGGTTCACAAAAGGATtcacaatgaagaaaaaatgtttaaatgtaatttgtgtgATTACACTAGCAACCACACGTCTAACTTAAAAGAACACTTGAGTAAACATTCgggtaaaaacaattttacttgcGACTTATGCGATTATAAAACGTGCTCCAAATTCAGGTTGACGAGtcacaaaaaagttcatttcgAGGATAAACCATTCAAGTGCGGTTTGTGCGATTTCACCACGAAACATTCGAGCTACTTGAAAGTGCATATGAATAAACATTCGGTTGATGATAAATTTACCTGCACTTTGTGCGATTTCACCACTAAATATTCGCGCAGTTTAAAAAATCACGTAAACACCCATCTgggtaaacttaaatttaactgcGACAAGTGCGATCACAAAACTTATTCGAAACTTCAGTTGACGCGACACAAAGTAATTCATTCTGAACATAAACCGTTTACGTGCAGTTTGTGCGATTTTGCCACAAAATACCCtcgcaatttaaaaattcacgtGAATAAACATTTGGGTAAACATAAATTTGGCTGTGATGAGTGCGATTATAAAACGTACTCGAAATACGTGTTGGAAAAACACAAACAAGTTCATTCTGAACTTAAACCATTTAGGTGCAATTTGTGCGACTACACCAGTAAATACTCGTTCAACTTAAAAGCGCACTTGAATAAACATTCGGGTGAAAATAAGTTAAGTTGCGATCGgtgcgattacaaaactcaCTCCAAATTTCAATTGATCGAACACAAAATAGTCCATTCCGATGATAAACCGTTCGGCTGCAGCTTGTGCGATTTCACTACTAAATATTCGCGCAATTTAAAAACGCACTTGAATAAACATTCGAGCGAATATAGATTTTATTGCGAtaaatgcgactacaaaactTATTCCAAATCCGTGTTGAAAAGACATATTAAAGTTCATTCCGTACATAAACCGTTTAGCTGCGGTTTCTGTGATTTCACGAGTAAACACTCGTGCAGCTTAAAAACGCACTTGTATAAACATTCgggtgaaaataatttttgttgcgaGAAGTGCGACTACAAGACGCATTCCAAATCCAATTTGGCGGCGCACAAAAAATTGCATTCTGATAACAAACCGTTTAAGTGCGATGTTTGCGATTACAGCACTAAACTTTCAAGTAACTTAAAACGACATTTGAAGAAACATTAG
- Protein Sequence
- MSEFTTTCRICLGTIKQEVKFEINNEPNTKLEFSMEDGVTVNENQLTCNKCMIVYSNVVKEEFDETCIKTEESVNCDMPLCVEENTLYCYNCNYGTNDKRNLTEHIFDHRFKCNQCNRTTSDNSLLIIHKQIVHSKEFIGKYSHSGGHKFNCDMCDYKTPIKSNLKVHKRIHNEEKMFKCNLCDYTSNHTSNLKEHLSKHSGKNNFTCDLCDYKTCSKFRLTSHKKVHFEDKPFKCGLCDFTTKHSSYLKVHMNKHSVDDKFTCTLCDFTTKYSRSLKNHVNTHLGKLKFNCDKCDHKTYSKLQLTRHKVIHSEHKPFTCSLCDFATKYPRNLKIHVNKHLGKHKFGCDECDYKTYSKYVLEKHKQVHSELKPFRCNLCDYTSKYSFNLKAHLNKHSGENKLSCDRCDYKTHSKFQLIEHKIVHSDDKPFGCSLCDFTTKYSRNLKTHLNKHSSEYRFYCDKCDYKTYSKSVLKRHIKVHSVHKPFSCGFCDFTSKHSCSLKTHLYKHSGENNFCCEKCDYKTHSKSNLAAHKKLHSDNKPFKCDVCDYSTKLSSNLKRHLKKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003996;
- 90% Identity
- iTF_00003996;
- 80% Identity
- iTF_00003996;