Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010003075.1:32895-35240[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.19 9.7 7.1 2.2 5 23 90 108 88 108 0.95

2 19 0.022 1.1 10.0 2.1 2 23 125 146 124 146 0.95

3 19 0.067 3.4 8.5 7.8 1 23 152 174 152 174 0.97

4 19 0.00029 0.015 15.9 1.9 1 23 180 202 180 202 0.95

5 19 0.014 0.71 10.6 5.7 1 23 208 230 208 230 0.98

6 19 0.24 12 6.7 1.5 2 23 236 257 235 257 0.95

7 19 0.00017 0.0086 16.7 3.6 1 23 263 285 263 285 0.99

8 19 0.0092 0.47 11.2 3.2 3 23 292 312 292 312 0.98

9 19 0.19 9.8 7.1 6.2 1 23 328 350 328 350 0.98

10 19 0.068 3.5 8.5 2.6 2 23 357 378 356 378 0.94

11 19 0.0013 0.067 13.9 3.7 1 23 384 406 384 406 0.99

12 19 0.00018 0.0091 16.6 4.2 1 23 412 434 412 434 0.98

13 19 0.00064 0.033 14.8 3.4 3 23 453 473 451 473 0.98

14 19 0.19 9.9 7.0 5.6 1 23 493 515 493 515 0.98

15 19 0.022 1.1 10.0 2.8 2 23 522 543 521 543 0.95

16 19 0.014 0.73 10.6 4.0 1 23 549 571 549 571 0.98

17 19 0.00013 0.0065 17.1 2.5 1 23 577 599 577 599 0.98

18 19 0.00017 0.0086 16.7 3.6 1 23 605 627 605 627 0.99

19 19 0.005 0.25 12.0 1.6 2 23 633 654 632 654 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.19	9.7	7.1	2.2	5	23	90	108	88	108	0.95
2	19	0.022	1.1	10.0	2.1	2	23	125	146	124	146	0.95
3	19	0.067	3.4	8.5	7.8	1	23	152	174	152	174	0.97
4	19	0.00029	0.015	15.9	1.9	1	23	180	202	180	202	0.95
5	19	0.014	0.71	10.6	5.7	1	23	208	230	208	230	0.98
6	19	0.24	12	6.7	1.5	2	23	236	257	235	257	0.95
7	19	0.00017	0.0086	16.7	3.6	1	23	263	285	263	285	0.99
8	19	0.0092	0.47	11.2	3.2	3	23	292	312	292	312	0.98
9	19	0.19	9.8	7.1	6.2	1	23	328	350	328	350	0.98
10	19	0.068	3.5	8.5	2.6	2	23	357	378	356	378	0.94
11	19	0.0013	0.067	13.9	3.7	1	23	384	406	384	406	0.99
12	19	0.00018	0.0091	16.6	4.2	1	23	412	434	412	434	0.98
13	19	0.00064	0.033	14.8	3.4	3	23	453	473	451	473	0.98
14	19	0.19	9.9	7.0	5.6	1	23	493	515	493	515	0.98
15	19	0.022	1.1	10.0	2.8	2	23	522	543	521	543	0.95
16	19	0.014	0.73	10.6	4.0	1	23	549	571	549	571	0.98
17	19	0.00013	0.0065	17.1	2.5	1	23	577	599	577	599	0.98
18	19	0.00017	0.0086	16.7	3.6	1	23	605	627	605	627	0.99
19	19	0.005	0.25	12.0	1.6	2	23	633	654	632	654	0.96

Sequence Information

Coding Sequence: ATGATGTCTGAAATAACTTCAACGACGTGCAGAAAAATTAAGGAAGAATCGGAACTTGAACTAAACAATGATTTAATGCCGGGGCTGAGCACCGAGCAAGACATCAGCACTACAGACACTTGTAATAAATGTAAGATCGAAATTGTAGCGCTCGACCAATTACATCCGGAAGTCAAACAGGAGCTCCTCGACGGTGGAATCAAGTCTGAAGAGATCGACATCGACGATTGTACGCCATCTAACCCTTCGATTATTGTGGAACACGttttgTGCAAATACGCATGCAATTCCAGATTCAATTTGATCAACCATAAAAGAATTCATTACGCTAAACGACCGTCCAAAAACATTCGTACCGAAGAAAAACCGCTTAGTTGCGATTTGTGCGAGTATCGTTGCAGGTATCCGAGAACTTTGAAGAATCACAAAATCATTCACTCGGATACgaaaccgtttaaatgcaaTCTGTGCGATTATAGTTGCAATTATAAATGTAGTTTAAAAGTGCATTCGTCGAAACATTCAGATGAAAAATCTTATCTTTGCGAtaagtgcgattacaaaactaATATGAAATCTAATTTGAAGAATCACATGTTTATTCATTCGGATgagaaaccgtttaaatgcgATATGTGCGATTATCGTTGCAATTTTTCGCGCAGTTTAAAAGTGCATTCGAAGAAACATTCGAATGAATTTATAAGTTGCGAcaagtgcgattacaaaactcaTATCGAATCTTATTTGAAGAATCACAAAATTATTCACTCCGATgagaaaccgtttaaatgcgATGTGTGTGATTATCGTTGCAACTTTTCGTCTAGTTTAAAAGTGCACTTAATGAAACATTCGGATGAATTAGTTGGTTGCGAcaagtgcgattacaaaactcGGAGCAAACTTGACTTGCGGAAGCACATACATATCCACtcggaaaaaaaatccaagcgTAAAAGAATTAATTCTGGTGAACAATTCAGCTGTAATAAATGCGACTTCAAATCTAAGTACAGATCGAGTGTTtgcaatcacaaaaaaattcatagtgAAGAAAAACCGCTTAGTTGCAATATGTGTGAGTATCGTTGCAAATATCCAAGAAGTTTGAAGTACCACAAAGTTATCCACTCGGaaagaaaaccatttaaatgcaaCCTGTGCGATTACAGTTGCAACTATAAATTTAGCTTGGACGTGCACATTATGAAACATTCAGATGACATTGGTTATCGTTGCGATAAGTGCGACTATACAACTCACACCAAATCTAATCTAAAGAATCACAAAATCATTCACTCGGatgaaaaaccgtttaaatgcgaCGCGTGCGATTATCATGAACCATTCGGTTGTGACAAGTGCGGTTATAAAACATGCAGCAACTTTGATTTGCAGAGGCACAGACGTATCCACTCTGAAGAAAAATCCGATGTGACCAAGTCCAAAAGAATTCATTCCGGCGAAGAACCTTTCAGCTGCGATAAATGCGACTTCAAATCTAAGTACAGATCGAGTGTCtgcaatcacaaaaaaattcatgacGAAGAAAAACCGCTTAGTTGCAATATGTGCGAGTATCGTTGCAAGTTTCCGAGAAGTTTGAGGAATCACAAAATCATTCACTCGgataaaaaaccatttaaatgcagTGCGTGCGATTATCgttgcaattataaatttagCTTGGACGTGCACATGATGAAACATTCAGACGACATGGGTTATCGTTGTGAtaaatgcgattacaaaactcaGACCAAATCTAATTTGAAGAATCACAAAATTATTCATTCGGATgagaaaccgtttaaatgcgATGTGTGCGATTATCGTTGCAACTTTTCGTCTAGTTTAAAAGTGCACTTGATGAAACATTCAGACGAACCACTTAGTTGTGAcaagtgcgattacaaaactcCCAGCAAACTTTATTTGCGAAAACATAAACTTACTCACTCTAAAGAAAAgtgtttaaatgcaatttgtgcAACTTTAGTACTAAATATtcggaaactttaa
Protein Sequence: MMSEITSTTCRKIKEESELELNNDLMPGLSTEQDISTTDTCNKCKIEIVALDQLHPEVKQELLDGGIKSEEIDIDDCTPSNPSIIVEHVLCKYACNSRFNLINHKRIHYAKRPSKNIRTEEKPLSCDLCEYRCRYPRTLKNHKIIHSDTKPFKCNLCDYSCNYKCSLKVHSSKHSDEKSYLCDKCDYKTNMKSNLKNHMFIHSDEKPFKCDMCDYRCNFSRSLKVHSKKHSNEFISCDKCDYKTHIESYLKNHKIIHSDEKPFKCDVCDYRCNFSSSLKVHLMKHSDELVGCDKCDYKTRSKLDLRKHIHIHSEKKSKRKRINSGEQFSCNKCDFKSKYRSSVCNHKKIHSEEKPLSCNMCEYRCKYPRSLKYHKVIHSERKPFKCNLCDYSCNYKFSLDVHIMKHSDDIGYRCDKCDYTTHTKSNLKNHKIIHSDEKPFKCDACDYHEPFGCDKCGYKTCSNFDLQRHRRIHSEEKSDVTKSKRIHSGEEPFSCDKCDFKSKYRSSVCNHKKIHDEEKPLSCNMCEYRCKFPRSLRNHKIIHSDKKPFKCSACDYRCNYKFSLDVHMMKHSDDMGYRCDKCDYKTQTKSNLKNHKIIHSDEKPFKCDVCDYRCNFSSSLKVHLMKHSDEPLSCDKCDYKTPSKLYLRKHKLTHSKEKCLNAICATLVLNIRKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00004008;
90% Identity: -
80% Identity: -