Ater001082.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Abscondita terminalis
Gene Symbol
-
Assembly
GCA_013368085.1
Location
JABVZW010000129.1:10063-12459[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.013 0.68 10.7 1.5 1 23 94 116 94 116 0.97
2 23 0.091 4.6 8.1 6.7 1 23 118 140 118 140 0.98
3 23 0.00087 0.044 14.4 5.3 1 23 160 182 160 182 0.99
4 23 0.026 1.3 9.8 2.1 2 23 199 220 198 220 0.95
5 23 0.079 4 8.3 7.8 1 23 226 248 226 248 0.97
6 23 0.00034 0.018 15.7 1.9 1 23 254 276 254 276 0.95
7 23 0.022 1.1 10.0 5.5 1 23 282 304 282 304 0.98
8 23 0.3 16 6.4 1.5 2 23 310 331 309 331 0.95
9 23 0.0002 0.01 16.4 3.6 1 23 337 359 337 359 0.99
10 23 0.3 16 6.4 1.5 2 23 365 386 364 386 0.95
11 23 0.23 12 6.8 6.2 1 23 402 424 402 424 0.98
12 23 0.08 4.1 8.2 2.6 2 23 431 452 430 452 0.94
13 23 0.0015 0.079 13.6 3.7 1 23 458 480 458 480 0.99
14 23 0.00021 0.011 16.4 4.2 1 23 486 508 486 508 0.98
15 23 0.0045 0.23 12.2 4.1 1 23 514 536 514 536 0.98
16 23 0.0016 0.081 13.6 4.2 3 23 543 563 543 563 0.99
17 23 0.23 12 6.8 5.6 1 23 583 605 583 605 0.98
18 23 0.026 1.3 9.8 2.8 2 23 612 633 611 633 0.95
19 23 0.017 0.87 10.4 4.0 1 23 639 661 639 661 0.98
20 23 0.00015 0.0076 16.8 2.5 1 23 667 689 667 689 0.98
21 23 0.0002 0.01 16.4 3.6 1 23 695 717 695 717 0.99
22 23 0.0059 0.3 11.8 1.6 2 23 723 744 722 744 0.96
23 23 0.00033 0.017 15.7 2.5 1 23 750 772 750 772 0.98

Sequence Information

Coding Sequence
ATGATGTCTGAAATAACTTCAACGACGTGCAGAAAAATTAAGGAAGAATCGGAACTTGAACTAAACAATGATTTAATGCCGGGGCTGAGCACTGAGCAAGACATCAGCACTACATACACTTCTAATAAATGTAAGATCGAAACTGTAGCGCTCGACCAATTACATCCGGAAGTCAAACAGGAGCTTCTCGACGGTGGAATCAAGTCTGAAGAGATCGACATCGACGATTGTACGCCATCTAACTCTTCGATTATTGTGGAACACGttttggtaaacattttttactgttatCAATGTAATTACGAtactaatgataaaaaaaaattaaccgaaCACATCAACGCTCAtcgttttaaatgtaatcacTGTCGTTACACAACGTTCAATCACTACGCGTTAATCAACCATGAACAAAAACACTTGAAAATTCGAACACCTTTACATGAGAATGTCGGCTCGAATAGCGAAGACGGACCATTCAAATGCAACAAGTGCAAATACGCATGCAATTCCAGATTCAATTTGATCAACCATAAAAGAATTCATTACGCTAAACGACCGTCCAAAAACATTCGTACCGAAGAAAAACCGCTTAGTTGCGATTTGTGCGAGTATCGTTGCAGGTATCCGAGAACTTTGAAGAATCACAAAATCATTCACTCGGATACgaaaccgtttaaatgcaaTCTGTGCGATTATAGTTGCAATTATAAATGTAGTTTAAAAGTGCATTCGTCGAAACATTCAGATGAAAAATCTTATCTTTGCGAtaagtgcgattacaaaactaATATGAAATCTAATTTGAAGAATCACATGTTTATTCATTCGGATgagaaaccgtttaaatgcgATTTGTGCGATTATCGTTGCAATTTTTCGCGCAGTTTAAAAGTGCATTCGAAGAAACATTCGGATGAATTTGTAAGTTGCGAcaagtgcgattacaaaactcaTATCGAATCTTATTTGAAGAATCACAAAATTATTCACTCCGATgagaaaccgtttaaatgcgATGTGTGTGATTATCGTTGCAACTTTTCGTCTAGTTTAAAAGTGCACTTAATGAAACATTCGGATGAATTTGTAAGTTGCGAcaagtgcgattacaaaactcaTATCGAATCTTATTTGAAGAATCACAAAATCATTCACtcggaaaaaaaatccaagcgTAAAAGAATTAATTCTGGTGAACAATTCAGCTGTAATAAATGCGACTTCAAATCTAAGTACAGATCGAGTGTTtgcaatcacaaaaaaattcatagtgAAGAAAAACCGCTTAGTTGCAATATGTGTGAGTATCGTTGCAAATATCCAAGAAGTTTGAAGTACCACAAAGTTATCCACTCGGaaagaaaaccatttaaatgcaaCCTGTGCGATTACAGTTGCAACTATAAATTTAGCTTGGACGTGCACATTATGAAACATTCAGATGACATTGGTTATCGTTGCGATAAGTGCGACTATACAACTCACACCAAATCTAATCTAAAGAATCACAAAATCATTCACTCGGatgaaaaaccgtttaaatgcgaTGCGTGCGATTACCGATGCAATTTTTCGTCTAGTTTAAAAACGCACTTGTTGAAACATTCAGATGAACCACTCGGTTGTGACAAGTGCGGTTATAAAACATGCAGCAACTTTGATTTGCAGAGGCACAGACGTATCCACTCTGAAGAAAAATCCGATGTGACCAAGTCCAAAAGAATTCATTCCGGCGAAGAACCTTTCAGCTGCGATAAATGCGACTTCAAATCTAAGTACAGATCGAGTGTCtgcaatcacaaaaaaattcatgacGAAGAAAAACCGCTTAGTTGCAATATGTGCGAGTATCGTTGCAAGTTTCCGAGAAGTTTGAGGAATCACAAAATCATTCACTCGgataaaaaaccatttaaatgcagTGCGTGCGATTATCgttgcaattataaatttagCTTGGACGTGCACATGATGAAACATTCAGACGACATGGGTTATCGTTGTGAtaaatgcgattacaaaactcaGACCAAATCTAATTTGAAGAATCACAAAATTATTCATTCGGATgagaaaccgtttaaatgcgATGTGTGCGATTATCGTTGCAACTTTTCGTCTAGTTTAAAAGTGCACTTGATGAAACATTCAGATGAACCACTTAGTTGTGAcaagtgcgattacaaaactcCCAGCAAACTTTATTTGCGAAAACATAAACTTACTCACTCTAaagaaaaagtgtttaaatgcaatttgtgcAACTTTAGTACTAAATATtcggaaactttaaaaaagcacTTGATTATGCATTCTCAGTGGGCCGAAGCACCGCGATGA
Protein Sequence
MMSEITSTTCRKIKEESELELNNDLMPGLSTEQDISTTYTSNKCKIETVALDQLHPEVKQELLDGGIKSEEIDIDDCTPSNSSIIVEHVLVNIFYCYQCNYDTNDKKKLTEHINAHRFKCNHCRYTTFNHYALINHEQKHLKIRTPLHENVGSNSEDGPFKCNKCKYACNSRFNLINHKRIHYAKRPSKNIRTEEKPLSCDLCEYRCRYPRTLKNHKIIHSDTKPFKCNLCDYSCNYKCSLKVHSSKHSDEKSYLCDKCDYKTNMKSNLKNHMFIHSDEKPFKCDLCDYRCNFSRSLKVHSKKHSDEFVSCDKCDYKTHIESYLKNHKIIHSDEKPFKCDVCDYRCNFSSSLKVHLMKHSDEFVSCDKCDYKTHIESYLKNHKIIHSEKKSKRKRINSGEQFSCNKCDFKSKYRSSVCNHKKIHSEEKPLSCNMCEYRCKYPRSLKYHKVIHSERKPFKCNLCDYSCNYKFSLDVHIMKHSDDIGYRCDKCDYTTHTKSNLKNHKIIHSDEKPFKCDACDYRCNFSSSLKTHLLKHSDEPLGCDKCGYKTCSNFDLQRHRRIHSEEKSDVTKSKRIHSGEEPFSCDKCDFKSKYRSSVCNHKKIHDEEKPLSCNMCEYRCKFPRSLRNHKIIHSDKKPFKCSACDYRCNYKFSLDVHMMKHSDDMGYRCDKCDYKTQTKSNLKNHKIIHSDEKPFKCDVCDYRCNFSSSLKVHLMKHSDEPLSCDKCDYKTPSKLYLRKHKLTHSKEKVFKCNLCNFSTKYSETLKKHLIMHSQWAEAPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00004107;
90% Identity
-
80% Identity
-