Ater000977.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_013368085.1
- Location
- JABVZW010000125.1:1368965-1388979[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-106 3.4e-102 342.0 32.4 1 300 163 456 163 456 0.92 2 2 0.0061 1.3e+02 1.9 0.3 120 163 454 497 453 500 0.91
Sequence Information
- Coding Sequence
- ATGGATGGTGGTGGCGGCCGGAGAAGGGTTGCAGCTAAATCGTCTGCAGAAGATCAGGCTCTCGATTTAATTGCGAAGGAAGTAAGTATTCCACAATTCATAGTAATTGCGAGAAATTTAAATTGGGACACGGCTTATAAAAGGGGGGCGTTAGGATGTGCAAGAGACGTGAGGTGCGGTTACAGTGATAAAATGAGTgacacacaaacaaaaaattccaCACCATCTGCTGGTAGTGTTGATTCACTAGccgatattttaaataatttaaattcggACGATGAGAGACAAAATACGGAGGACGAATGCGAAGACGGTATTATAGAATCGGAAATtgattcaaacaaatttaaattaacgggTGTAACCGAAGATGGTACTAATGATAGCGATACTACTGACGTCCGCTTGAGCAGGAAAAATAGTAGCGTATGCTTTGAAGAAGGGAATATCATCAATCAGTTTCTTAATTCTTGTAACGATAATGCGGAGGCGCGTCTGTTAGCGAGGCGACAAGCTCGAGCTGAAGCTAGAGATATTCGTATGCGTGAACTAGAACGTCaacaaaaagaacaagaagAGAATGCTGATCGGCAGTATGACATGATAGAACAATCGCATCGAACAACTAGAACTACTAGTAATCGATTCTTGTCTAGTCGGAGGAGTTCGGAAGATTCTTTAGAGGATGGAGGAAGCATCAGGGAAATTAGACATGAACTTAAAGAAATGGAAGAGAAGTTTCGAAAGGCCATGATAGCAAATGCTCAATTAGACAACGATAAAGCGTCACAGACATATCAGTTGGAACTTCTGAAGGATAGGTTAGAGGAGTTGGAAGAAGAATTTTCTCAACTTCGCCGCGAGCATCGAGATAAGTGTCGAGATCACGATCAACTTAAGAGATTGTCGGCACGTTTAAAAGATGATTTAGCTGTTACCCGTTTAGAATTAGATGAAAGAGATCGATTGATTGCCGAAAAAGGTTTAGTGATAGTAGTTGAAGATACTTCTTTTTatgaagaagaggaaaaaagtGATGGTACTGTTAATGGCATTTGTAGTACTCCAAAGAAATCGTTGGTGTCTGCTGAAAATGCTCAGTTGTTAGAGAATGCCGGAGAAGGTAGTTTAGACGTTCGGTTAGCCAAATTTGCTTTAGAAAAGAAAGATCTACAAGATCAAATAAGTCATTTAAGAttagaattagaagaagaaaaaagtaggAAAAGAAAAACTAGTGGAATCACTTTGAACGGGCCTACCTCCGACTTTGATTGTGATCCTGATGATGTTCAGAGAGATGTAGGAAGACAATTAGCCGATTACAAATTTAGAGCTCAAAAGGCTGAGCAAGATGTGGCTACGTTGCAAGCTACTGTAGCTAGATTAGAAAGTCAAGTTATTAGATACAAATCGGCTTCAGAAATATATGAAAAGTCCGAAGAAGCGCTTAAACAAGAAAAGAGGAAATTGCAAAGAGAGataTCGGGCATAGCTATACTTACCGTTGGTGCTGTAATCCATGCTTTATATCATCCCTATTCGCAGTTTGTCGATCCGAGCTTTGAATCAGCACCTATATTATTGATAATAGTCGgagtaattgtttttatagttgCTTTCTTCGGATGCTGTGGTGCTGTTAAAGAGAATCATTGTATGATCATCACGTTTTCTGCATTTTTGATCATCATATTCTGTTTGGAAATGGCTGCTGGGATAGCAGGATATGTACGTCGCAATGACATCGAAGATATGTTGGACACCCACTTGAACAATACCATGCACGAATATTACAATAAAGCGGATGCAAAGCGTTCTTGGGATATCATGCAGCATGAGCTGAAATGCTGCGGAATGAACGGTCCAAGTGATTGGGCTGAAATTATACACAACAACTCCCTACCTCACACTTGCTGTCCGCCCGACGTTACGGAAAGCCCTTGCACGACGCAATATCctgataaatatgaaaaatcttGTCTCACCGAACTCAAACAGGCGCTGGTAAAATACGGAACGATTATTGGAGGAGTAGGAGTAGGAATTGCTTTGGTgcagCTAATTGGAGTGGTCTTTGCTTGCTGTTTGGCTCGTTCGATTCGTAAGGAATACGAAACTGTATAA
- Protein Sequence
- MDGGGGRRRVAAKSSAEDQALDLIAKEVSIPQFIVIARNLNWDTAYKRGALGCARDVRCGYSDKMSDTQTKNSTPSAGSVDSLADILNNLNSDDERQNTEDECEDGIIESEIDSNKFKLTGVTEDGTNDSDTTDVRLSRKNSSVCFEEGNIINQFLNSCNDNAEARLLARRQARAEARDIRMRELERQQKEQEENADRQYDMIEQSHRTTRTTSNRFLSSRRSSEDSLEDGGSIREIRHELKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEFSQLRREHRDKCRDHDQLKRLSARLKDDLAVTRLELDERDRLIAEKGLVIVVEDTSFYEEEEKSDGTVNGICSTPKKSLVSAENAQLLENAGEGSLDVRLAKFALEKKDLQDQISHLRLELEEEKSRKRKTSGITLNGPTSDFDCDPDDVQRDVGRQLADYKFRAQKAEQDVATLQATVARLESQVIRYKSASEIYEKSEEALKQEKRKLQREISGIAILTVGAVIHALYHPYSQFVDPSFESAPILLIIVGVIVFIVAFFGCCGAVKENHCMIITFSAFLIIIFCLEMAAGIAGYVRRNDIEDMLDTHLNNTMHEYYNKADAKRSWDIMQHELKCCGMNGPSDWAEIIHNNSLPHTCCPPDVTESPCTTQYPDKYEKSCLTELKQALVKYGTIIGGVGVGIALVQLIGVVFACCLARSIRKEYETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00853960;
- 90% Identity
- -
- 80% Identity
- -