Acer006448.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010000131.1:130779-132485[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-13 1.1e-10 43.3 0.0 1 38 11 48 11 55 0.90
Sequence Information
- Coding Sequence
- ATGCCACCAAAATTAAAGCGCGCTTCATGGACTCCTGAGCAGTTGAAAGCTGCAATTAACGCAATAAACGCCGGAGAAATGTCTCAAAGAGAAGCTGCTCAACGATTTAATGTACCCAGAAGAACTCTAAGGAATCACCTGGCTTCTGGAATTATGGATAAAAAATTGGGCGATCCAATAGGAATGCCTCTAACACCAATGCTGGTACGTCGCTCTGCGTTCAAATTCTGTCGTGAAAACAACATCCAAAATCCATTCAATGCTGCAAAGGAAATCGCTGGAAAGGATTGGCTATATGGGTTCTTGAAACGAAATCCCGTCTTGGCGCGTCGCAAGGCTCAGCTAATGAATCCAGCTCGtgctcaaaaattgaataaattcatAGTCGGAGATCACTTTGATAAGCTGGCCCAAATCTTTGAGGAAATGGATTTACATAAGAAcccacaaaatattttcaatatggacGAAAAGGGGTGCCGACTTACTATTCACCATAAACAGCTGGTCATTGGACAAAAAGGTGCCAGACGTATCCACTTAGTTGCACCTGAACATGCTGAAAATGTGACAATCGCTGGCTGCTGCAATGCTCTTGGAAATAGTATCCCACCTATGGTCCTATTCAAAGGAAAGCGCTTGAAACCCGAATGGACAGATAACCTACCAGCAGGTACCTTGGTCAGAATGGCTGACAAAGGAAGCATGACAAATCAACTCTTCATTGAATTTCTAACGCATCTACATCGCTACAAGGGTCCAAATAAAATCCTGCTTATTTTTGATGGTGCTGCTTGCCATTTGGATATTTCCATCGTCACGGTTGCAGAAGATCTAAATATAAGGCTATACTGCTTACCCTCTAATACAACACATGAACTTCAACCGTTGGACAAAGCTGTCTACAGGTCTTTCGAACATCACTGGGACCAAGAACTTCTCAGGTATTGGGATGCACACCCTGATCTTTGGCCGAAATGTATGAcaccagaaaatattttgagcgGCTTCCAAGCAACAGGCATATATCCACTTGATCGTACTGTTATCCCAGAATCAGCTTTCGCACCTTCGCTAGCAACCGAACGTCCTTTCGCAATGGAACCATTGGAGACCGAAGAGAATGACGGCATTAGGCGCAATAATGGAAACGACCATCCTATTGATCTCCATGATTGCGATTCAAACGACTCAGCAGATGATGTACCATTGAGTGCACTGAGTAATATTCTGAAGAATGCTGCCTATGAAAAAGTTTCTGATAAGATTGGAAATCGTTCTGAAGCACCTGTTCATGGGCAAACACAGACAAAAGATGAAGATCTCAATACTTCGTTTAAAGAGCTGCTTCCCACCCCAGAATTGTACAAATTTAAAGGGAAAACTCAAAGAGAAAGTCTCAATTACAAGGCTCAGATCGTAACCAAAGATCTCTTTTCTACTTCAATAACTAAGAATCCTAAGCCCAAACCTGCTGCTTCCAAAAAAGAGAGGATCCAACTCCATCAACATCAGCGAATGTGGGTAAGCACGCAGAGAATAATATCCTCCAGGAAAAAGAGTCTTGGTATTGCTTTGTGTGTGACGAAACAAAGCAACTTGACATGA
- Protein Sequence
- MPPKLKRASWTPEQLKAAINAINAGEMSQREAAQRFNVPRRTLRNHLASGIMDKKLGDPIGMPLTPMLVRRSAFKFCRENNIQNPFNAAKEIAGKDWLYGFLKRNPVLARRKAQLMNPARAQKLNKFIVGDHFDKLAQIFEEMDLHKNPQNIFNMDEKGCRLTIHHKQLVIGQKGARRIHLVAPEHAENVTIAGCCNALGNSIPPMVLFKGKRLKPEWTDNLPAGTLVRMADKGSMTNQLFIEFLTHLHRYKGPNKILLIFDGAACHLDISIVTVAEDLNIRLYCLPSNTTHELQPLDKAVYRSFEHHWDQELLRYWDAHPDLWPKCMTPENILSGFQATGIYPLDRTVIPESAFAPSLATERPFAMEPLETEENDGIRRNNGNDHPIDLHDCDSNDSADDVPLSALSNILKNAAYEKVSDKIGNRSEAPVHGQTQTKDEDLNTSFKELLPTPELYKFKGKTQRESLNYKAQIVTKDLFSTSITKNPKPKPAASKKERIQLHQHQRMWVSTQRIISSRKKSLGIALCVTKQSNLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00002499; iTF_00001870; iTF_00002319; iTF_00001894; iTF_00001899; iTF_00001900; iTF_00001904; iTF_00001891; iTF_00001887; iTF_00001905; iTF_00001945; iTF_00001885; iTF_00001886;
- 90% Identity
- iTF_00001894;
- 80% Identity
- -