Basic Information

Gene Symbol
nfxl1
Assembly
GCA_946251925.1
Location
CAMIUJ010000037.1:688843-691317[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 2e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 16 0.014 1.4e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 16 3.1e-07 0.0031 17.6 15.9 3 19 187 203 186 203 0.95
4 16 2 2e+04 -5.5 1.2 6 10 228 232 228 232 0.69
5 16 2.7e-06 0.027 14.6 14.3 3 19 240 256 238 256 0.92
6 16 0.8 7.9e+03 -2.8 1.6 6 10 281 285 280 285 0.90
7 16 2.8e-10 2.8e-06 27.4 14.5 1 19 291 309 291 309 0.99
8 16 9e-06 0.089 13.0 19.2 3 19 346 362 338 362 0.86
9 16 0.00033 3.3 8.0 20.3 1 18 396 413 396 414 0.97
10 16 4.5e-10 4.4e-06 26.7 14.0 1 19 423 441 423 441 0.99
11 16 0.00038 3.8 7.8 8.1 9 19 489 499 487 499 0.90
12 16 0.015 1.5e+02 2.6 7.6 3 12 510 519 509 519 0.87
13 16 0.4 4e+03 -1.9 3.4 14 18 548 552 548 553 0.85
14 16 9.1e-06 0.09 13.0 5.3 1 11 589 599 589 600 0.97
15 16 4.2e-05 0.42 10.8 14.2 4 18 631 646 629 647 0.85
16 16 6e-06 0.059 13.5 10.7 1 18 688 706 688 707 0.86

Sequence Information

Coding Sequence
ATGGCGCGTAGGTACAAAGACGCTGCTGCAAAGCTGCAGCTAAATGTACAGAAACATTTAAAAGTCATGAAAGAGCTTTCATCTTCAGAAGACGAGGAGCCCTGCGAGTCCAGCGTCTTGGATGGAGTGTTCCAGAGCTACTGGCGGGGCGGGGGAGACAAAAATATGCTAAATAGGACCAAAAATCTTTTAGAAGAGGCGATAAGCGGTCGTTCTGTGACATGTCTAATATGCATTGGATCTATCAAAAGAACTCACGCTATATGGACTTGTGATCACTGTTACTCTTACTTTCATCTATCGTGTATTCAGAAATGGTCACAGGATAGTATTAGTTTACGTAGCGAGGAAAGTCAGGGCCCGATCACTGTATTCAAACAACAGAAAATTGAATGGTGCTGTCCTAAGTGCCGGCATTCGTATACCAAAGATGAAGTACCGCGGAAGTATCGTTGCTACTGTGGTAAAACTGATGACCCACAATACCATCCATGGCTCATCCCCCATACTTGTGGAGAAGTTTGTGAAAAAAGACTGTCAGTGGATAATGACAACTGTAAACATAAATGTTTGCTTCTGTGTCACCCCGGCCCGTGTCCGCCTTGCCCCCAGACTGTTAATGGAATATGTTTTTGTGAAAAGGAACAAAAACGAGTGAGATGCAGTGCTGCCAAATGGTCCTGTGGCCAACTGTGCAAGAAGTCTCTTCTATGTAAGACTCACAAATGTGGAAATGTGTGTCATGAAGGTGAATGTCCTCAATGCAGCTACACCAGTGTTCAGCCATGCCAGTGTGGTGATAAGAAAGCTAAAAGACCATGCAATGATCTTTTTTGGCAGTGTGAGAAGTTATGTGGTAAGCTATTCTCATGTGGTTACCATAAATGTGAAAAAATCTGTCATTCAGGCAACTGTGGGCCATGTCCCAACTCTGGAATGACATCATGTCCATGTGGGGCCAACCAACGCTATGTACAATGTCCAGATGTTATGGAGACCTGTGTGGGCACATGTGGGAAGAGACATGAAGATTGTGAACATAACTGTCCAGAAAAATGCCATAAAGGGAAGTGCCCACCTTGCCAAGTCTTGATACAGAAGAAATGCCTGTGCTCAACACACACTAGGTCATTGCCATGTAGTAAAGAATTTAAATGTGATACAAAATGTAGAGGAATAAGGCTATGTGGTAAACATGGGTGTGGCCGAAAATGCTGCAATGGAACGTGTCCCCCATGTGAAAAAATTTGTGATAAAGCTCTACAGTGTGGTAGGCACAAATGCACAAATATATGTCATCGTGGACCATGCTACCCGTGCCCCAGAGAATCTAAAGTAAGTTGTAGATGCAAAGAGACATACATAACGGTACCGTGTGGCAGGGAGCGACAGACTAAACCTCCCAAATGCAACTTGCCGTGCAAAATTAAATACAAATGTGGCCACAGCGAGCATAATAAACACCCCTGTCATTTTGGTGAGTGTCCACCATGCAAAGCTATTTGTTATAAGCCATATCCCAAGTGTACCCACCAGTGTAAAGCAGTGTGCCACGAGTATGTTGCTGTACTCTTCAAACAAGTAGAAAAACCTGCTACTCCATGGGAAGTACAACCACCAAAAACTAAGATCATGACATTAGAATGTCCACCATGTGACACTCCAGTACCAATTGTTTGCTTTGGTGAACATGAGACAGACAATCAGCCATGCAGTTCAGCTGCTCGCAGGCCTTGTGGGAGAGAATGCGGACAGCCATTGTCTTGTGGCAATCACAAGTGCACTTTACTTTGCCATCTTTATAGCCCACATTCTGAGTATCCTAATGTGCCTTCTAGCTGCAAGCAGTGTGACAGAGAATGTTTAGTTTCCCGTCCTGAAAAATGCACCCATAAATGTGCAATTCGGGCCTGCCATCCAGGCCCATGCCCTCCATGTGAGATACTGGAACGATTAGCCTGTCACTGCGGTATCACAGAGATTTATTTGCGATGCCGGGAAATATCTAAAGCAACCAAGGAGATGCTGTCATGCAAGCAACAATGTCCAAAAAACTTAGAATGTGGTCACCGCTGCCGCAACACATGTCATACTGGAGCTTGCAACAACCAAGTGTGCACCAAGAAAACTAAAGTCCACTGCCCCTGTGGTAACATAAGAAAGGAAGCCCCCTGCAACTCTGTTAGACAAGGCAGCACCAAAATACTGTGTGATGAAAGCTGTGAAGCTAAAAAGATAGCAATGAGGATAGATAGTGAGAAAGAAAAGCAGAGATTGAAGGAGTTAGAGGAGGAGAAGAATCGTAAAGAATTAGCAGAGTATGAGTGGAAACTGAGCGGCAAGAAAAAAAAGTATAAGGAGAAGAAGTCAGTAGTAAGTAAGGACGACAGAGGAGTGTTAAGGAAGTATTGGGTACCAATAACATCATTTTTGATTATGATAATAGCTGCATTTTATTATATATTCTATGTGTAA
Protein Sequence
MARRYKDAAAKLQLNVQKHLKVMKELSSSEDEEPCESSVLDGVFQSYWRGGGDKNMLNRTKNLLEEAISGRSVTCLICIGSIKRTHAIWTCDHCYSYFHLSCIQKWSQDSISLRSEESQGPITVFKQQKIEWCCPKCRHSYTKDEVPRKYRCYCGKTDDPQYHPWLIPHTCGEVCEKRLSVDNDNCKHKCLLLCHPGPCPPCPQTVNGICFCEKEQKRVRCSAAKWSCGQLCKKSLLCKTHKCGNVCHEGECPQCSYTSVQPCQCGDKKAKRPCNDLFWQCEKLCGKLFSCGYHKCEKICHSGNCGPCPNSGMTSCPCGANQRYVQCPDVMETCVGTCGKRHEDCEHNCPEKCHKGKCPPCQVLIQKKCLCSTHTRSLPCSKEFKCDTKCRGIRLCGKHGCGRKCCNGTCPPCEKICDKALQCGRHKCTNICHRGPCYPCPRESKVSCRCKETYITVPCGRERQTKPPKCNLPCKIKYKCGHSEHNKHPCHFGECPPCKAICYKPYPKCTHQCKAVCHEYVAVLFKQVEKPATPWEVQPPKTKIMTLECPPCDTPVPIVCFGEHETDNQPCSSAARRPCGRECGQPLSCGNHKCTLLCHLYSPHSEYPNVPSSCKQCDRECLVSRPEKCTHKCAIRACHPGPCPPCEILERLACHCGITEIYLRCREISKATKEMLSCKQQCPKNLECGHRCRNTCHTGACNNQVCTKKTKVHCPCGNIRKEAPCNSVRQGSTKILCDESCEAKKIAMRIDSEKEKQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKSVVSKDDRGVLRKYWVPITSFLIMIIAAFYYIFYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00932106;
90% Identity
iTF_00000864;
80% Identity
-