Atri016009.1
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000073.1:1262216-1264555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4e-06 0.00024 21.5 4.2 1 23 8 31 8 31 0.95 2 20 0.0025 0.15 12.7 0.1 3 23 38 59 36 59 0.95 3 20 6.9e-06 0.00041 20.8 0.2 2 23 68 90 68 90 0.96 4 20 6.6e-06 0.00039 20.9 2.5 3 23 100 121 99 121 0.98 5 20 6e-06 0.00035 21.0 1.4 2 23 129 151 129 151 0.95 6 20 9.1e-06 0.00054 20.4 2.1 2 23 158 180 157 180 0.96 7 20 6.7e-07 4e-05 24.0 1.1 1 23 186 209 186 209 0.98 8 20 1 60 4.5 0.6 1 23 217 240 217 240 0.96 9 20 6.5e-05 0.0038 17.7 0.3 1 23 255 278 255 278 0.95 10 20 0.00023 0.013 16.0 1.9 1 23 303 326 303 326 0.97 11 20 1.6 92 3.9 0.2 2 21 334 353 333 354 0.90 12 20 0.017 1 10.1 2.2 2 23 363 385 363 385 0.95 13 20 0.05 3 8.6 3.8 1 23 407 430 407 430 0.97 14 20 1.4e-05 0.00081 19.9 0.4 2 23 437 459 436 459 0.96 15 20 2.5e-05 0.0015 19.0 1.9 2 23 466 488 465 488 0.94 16 20 0.0071 0.42 11.3 2.2 1 23 494 517 494 517 0.97 17 20 0.18 11 6.9 7.1 2 23 525 547 525 547 0.95 18 20 0.00092 0.054 14.1 0.1 1 23 554 577 554 577 0.97 19 20 0.024 1.4 9.7 1.9 1 23 584 607 584 607 0.90 20 20 0.036 2.1 9.1 2.8 5 23 624 643 621 643 0.90
Sequence Information
- Coding Sequence
- ATGTACCTAAACCAGCTAGATTTTGTCTGCGACTACTGCTCAAGAACGTTCACGAGGAAGTACAACCTTCAGACACATATAGAGAACTGCCATGTTAACTCCTCAAGCCACTGCGATGTCTGCGGCCAGACCTTCGGCAGTCCAGCCGGAGTGCAGCAGCATTTGCTCAGAGGCCATAACAGTTATGGCCAGTCGTTCCCCGAGTGCGACATCTGCGGCCGAATTTTCACCAGGAAACAGAACATCACTGCTCACATGCTTTCTGTACACCTGCAGGTACCCAACTATTCTGTACTCTGTAAGTTTTGCGATAAGAAATTCTCCTCTATAAAGAATTTGAAGCGACATATGAATATGCTACACAATCCCGATGTGGAGTATCCGACTTGTAATGATTGTAATAAAGTGTTTAAAAGCAAGCAGTCGCTTATAACACACATTCAGCAAACACATAAACTAGCTACAGTAATAAAGTGTCATTTATGTGAGAGAGTGTACACAAACAATAGAAATTTGAAGCGGCATATTGAGATGTATCATGGAGAGAAAAGCGAGTTCCGATGCGATATTTGTCCGAAAGTCTACACGTCCAACCAGAGTTTGCGACGCCACGCCCGTACAAGACACAGCACGGACAACCAGGAGCAGTTCTCGTGCAATTTTTGTTTAAAACTTATCGTTGGAAGGGAGAATTTCGAGTCCCATTTGCAGTCATACCACCAAGAATACCAAGAAGTAGATTCGGAGGTCAAAACAGCGGAATTCTTCTGCGAATATTGTGACAAGAGTTTTGAAGAAGAACCCTCGTTGCGGCAGCATATAAAAGCAGAGCATTCGTTTAAGACGTTCTACAGGTACTGCAAGAAATATCTGCTGAAGCAGTACCGTATGGATATGAAGCAGATTTACCATTGCGAGTTCTGCAGTACACCGTTTCCCACAGTCTATGAACTGAAGAATCATATGAAGATGAATCACGACACAGAGTACTCTTTATCTACTTGCAATGTGTGTTTCAATAAGTTCTACAGTAAGGAAGCCATTGTGGCACATAAACAGGTCTGCATACCCCCCCGAGACGTTAACTCCTGCAGCCATTGCGATAAACTGTTCACTGATATCTCCAGCCTAGAATTCCATACGAGGATATTTCATCCCCAAGCTCAGATCGCCGATTCTAACATAACATCCACGAACATAGATGATGAAACTCTCGCGTTCAAATGTGAGAGCTGCGACCGGCTCTATTATAGCGATAGGTCGCTCAAACATCATATAAAGTTGAAGCATACGACGGACGAGGCGGTGGAGTGCCAGATTTGTGGCAAAATTTGCAGCAACAAATATTATCTAGCTTCCCATATCAAGATCGTCCATAATACGGACTCCTGGTCGCAATGCGAGTACTGCGATAAGCAGTTCAAGTCGAAAAGGAATATACGGAGGCATATTGAGTATACGCATTTGGGCATGCAACGGTATAAGTGCATTGAGTGTGAGACGTTGTTCAAAGAGAAAAGGAGTCTTCGGAAGCATGTGAGGACGAAGCACCCAAACTCGACGGCTTTTCCCCAATGCCATATTTGTCACAAGCGCTTTGAGTCAGCCAAGTCTTGTAAAATCCATTTAAAATTGCTCCACTCCTTCAATATGAACACTTTTCCGTGCGATTTGTGCTCAGTATCCTTCCAATCCAATGAAGCACTCACCATACACTTAGAGACAAAACATTTGGCTGAAGACGAGATCTACAAGTGTGAGGAGTGCAATCTCGTATTTAAGGGTCAGGAAAAGTTTGACAGCCACAACGAGGTTTGCCACGTGAATTTGGTCCCTAATATCAAGCAGAAAGTGCTACCTCGATGTATATTGTGTATGAAAGACTTTAGCACTCGGAAAACATTGAAACGACATATCAAGAAGTTCCATCAAGATTTCGATGTCGACGACCTGGCGACATTCGGATCACGACACAGAGAGTTCACAGTCGATTGTGACGAGTGCCTCAAAAATATTAATGACGAATTCTATATAAATATCTACCAGAAGTTAAAACACTTAAGGGATTCAATCGTTTTCAAGTGCGAGACGTGTTTAAGTTCGTACAACTCGCTCGAATTTGCTATACAGCGGTATAAGGTTAGTGATGTCGGTGCTTATAAAAGCAAGATGATACTTAGTGAGCTCTGTACTGCGGAGATGAGCGAGGAAGAAGCTGATTTCTCTGGTTTCGGAGCGTTACACGACATGTTGCCAGAGAGCACGACCAATGACATCAAATTGGAGCTGTTTGATGAGTGTTTAGAGTCTGATATCAAAATGGAGCCTCCGTCGCCTTGA
- Protein Sequence
- MYLNQLDFVCDYCSRTFTRKYNLQTHIENCHVNSSSHCDVCGQTFGSPAGVQQHLLRGHNSYGQSFPECDICGRIFTRKQNITAHMLSVHLQVPNYSVLCKFCDKKFSSIKNLKRHMNMLHNPDVEYPTCNDCNKVFKSKQSLITHIQQTHKLATVIKCHLCERVYTNNRNLKRHIEMYHGEKSEFRCDICPKVYTSNQSLRRHARTRHSTDNQEQFSCNFCLKLIVGRENFESHLQSYHQEYQEVDSEVKTAEFFCEYCDKSFEEEPSLRQHIKAEHSFKTFYRYCKKYLLKQYRMDMKQIYHCEFCSTPFPTVYELKNHMKMNHDTEYSLSTCNVCFNKFYSKEAIVAHKQVCIPPRDVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNIDDETLAFKCESCDRLYYSDRSLKHHIKLKHTTDEAVECQICGKICSNKYYLASHIKIVHNTDSWSQCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFQSNEALTIHLETKHLAEDEIYKCEECNLVFKGQEKFDSHNEVCHVNLVPNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHQDFDVDDLATFGSRHREFTVDCDECLKNINDEFYINIYQKLKHLRDSIVFKCETCLSSYNSLEFAIQRYKVSDVGAYKSKMILSELCTAEMSEEEADFSGFGALHDMLPESTTNDIKLELFDECLESDIKMEPPSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00000536;
- 90% Identity
- iTF_00000536;
- 80% Identity
- iTF_00001345;