Atri007127.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- egg
- Assembly
- GCA_905340225.1
- Location
- HG996515.1:2462024-2471140[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2 9.1e+03 -3.3 0.0 32 38 67 73 62 74 0.83 2 2 7.4e-14 3.3e-10 39.7 0.0 4 75 105 169 102 171 0.89
Sequence Information
- Coding Sequence
- ATGCCCTATGTAGAGTACACACGATCGGATGAGCCGGAGTCTAACAAGCAGCAACACACAGATACACAGGTGCAACAACAAACTAATGAGGAGATACGTCGTCAGCGTGCTGTAGCCAAGAAGTCGACGTCAGTCCCCCCCGCCGCTCCCCCCCCACCGCAGCCGCTCCCGGGGAACATAGACAACGCCCTCGCCAGCAGAGTTGTGTACTACACACCGAAGCATGCGGTCCGTCCGTACAAGATGGTCCCACACAAATGTGGTCCGAAGTGCAAGAGGAGCGATGTGCTGACACTCAAAGACCTTCGGACATACAACCCGCTGGCGAAACCGCTGCTCAGTGGATGGGAGAGACAAATAGTCCGCTTCAAGGGCCACAAGGAGGTGATGTACCGCGCGCCGTGCGGGCGGCGCGTGCGCAGCATGTGCGAGCTGCACACCTACCTGCGGACCGTGGACAGCGAGCTGCCCGTCGACCTGTTCGACTTCCACCCCGCCACGCACTGCCTCGCCGAGTTCGTGCACAACAAGTGCCTGGTGGGCAAGAAGGATCTTTCCCACGGCAAGGAAAACGTGCCGGTCCCCTGCGTGAATTACTACGACGACTCGCTGCCAGAGTTTTGTTCTTATAACACGGAGAGGACCCCCACCGCCGGGGTCCCGCTCAACTTGGACCCCGAGTTCCTCTGCGGCTGTGACTGTACCGATGACTGTGAGGATAAAACTAAGTGTGCTTGCTGGAAGATGACGCTAGAGGGCGCTAGGACCATCGGGCTGGAAGGACCCAACGTGGGCTATGTGCACAAACGACTGCCCGAGCCGCTCCCGTCGGGCATATACGAGTGTAACTCTAGATGTAAATGCAAGCACACGTGTTTGAATCGCGTCGCGCAACATCCTCTACAGTTAAAGTTGCAGGTGTTTAAAACAGTGAACCGTGGTTGGGGTATCCGGGCGCTTAACGATGTGCCCAAAGGCTCCTTCCTATGCGTGTACGCAGGCAATCTATTAACCGACGCTACAGCTAACTTGGACGGCTTGAACGAAGGCGACGAGTATTTAGCCGAATTAGATTATATAGAAGTAGTAGAACAAATGAAGGAGGGCTACGAAGAAGATATACCGGACGCTGATAAGAAACTAGACAAGAAGGAAACCAAAGGTGATGACACCGAGAGTGAAGAAGAACCTTCTTCGTCAGAGGAGGAAGAATCAGCGTCCAAGACTGATAAAGAAGATGATGACTTCCGGCCAGGGTATATAGGACTAGGAGTCATGGAGTTTAATAAGCGATTGCGGCGACGCGAAAAGTTAAAAAAGGAGAAAGAAGAGCCCGAAGAAGAGAAAGAGAAGGAAAAAGAGAAAGAAAAGGAAGCCAAAGAATCGAATGCTGAAGAGGATTGCATCACAATCAGTGATGATGAAGAAGTGAGAGAGCCGTCTCGATTCACGGTACAAGCTGGCATGGGCGCTAATGAGTTCATATCAAAATATAGGTCGGTCCGCTCCCTCTTTGGGAAGGACGAGGCCTGCTACATCATGGACGCTAAGGTTCAAGGCAACATCGGCAGATACCTCAATAACGTGTTTGTGGACACGCACGACCCTCGCTTCCCGTGGGTGGCGTTCTTCGCGCTATCCCACATCAAGGCCGGCACAGAACTCACCTGGAACTACAACTACGACGTGGGTTCGGTTCCCGGGAAGATACTTTACTGCCATTGTGGCGCCCCTAACTGTAGGGGACGGTTGCTATGA
- Protein Sequence
- MPYVEYTRSDEPESNKQQHTDTQVQQQTNEEIRRQRAVAKKSTSVPPAAPPPPQPLPGNIDNALASRVVYYTPKHAVRPYKMVPHKCGPKCKRSDVLTLKDLRTYNPLAKPLLSGWERQIVRFKGHKEVMYRAPCGRRVRSMCELHTYLRTVDSELPVDLFDFHPATHCLAEFVHNKCLVGKKDLSHGKENVPVPCVNYYDDSLPEFCSYNTERTPTAGVPLNLDPEFLCGCDCTDDCEDKTKCACWKMTLEGARTIGLEGPNVGYVHKRLPEPLPSGIYECNSRCKCKHTCLNRVAQHPLQLKLQVFKTVNRGWGIRALNDVPKGSFLCVYAGNLLTDATANLDGLNEGDEYLAELDYIEVVEQMKEGYEEDIPDADKKLDKKETKGDDTESEEEPSSSEEEESASKTDKEDDDFRPGYIGLGVMEFNKRLRRREKLKKEKEEPEEEKEKEKEKEKEAKESNAEEDCITISDDEEVREPSRFTVQAGMGANEFISKYRSVRSLFGKDEACYIMDAKVQGNIGRYLNNVFVDTHDPRFPWVAFFALSHIKAGTELTWNYNYDVGSVPGKILYCHCGAPNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363129;
- 90% Identity
- iTF_00001199;
- 80% Identity
- -