Atri015637.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- -
- Assembly
- GCA_905340225.1
- Location
- HG996493.1:12328257-12330674[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 5.1e-08 32.8 0.0 1 43 10 53 10 55 0.84
Sequence Information
- Coding Sequence
- ATGCCAAAAGCACCTAAATTAAAATACACACAAGAAAACCTTAAAAAAGCGATTGCTGAAGTTCAAAACAATGAACAGCAGTTGTCTGATCGTCAAATAGCTCAAAAATATGGTGTTCCAAGATCAACACTTAGGTTTTATAAACGTAACCCAGGCCACAAGACTAGCTTAGGCCCATCGCCTATCTTGACTCCAAATGAAGAAGCTCTTCTTGAAGATTGGATTATAACTTCAGCTCGAAAAGGTTTTCCAAAGAATAAAGAAAATATTTTAGATAGCGTACAAAAGTTTCTAGTGGAGAATCCACGACCTAATCCGTTTTCGAATAACAGGCCTGGTATTGGGTGGTGGAAGGCTTTTTTAAAAAGACACTCTAAATTAAGTATCAGGACATCTGAAGGAGTGACTAAAGCCAGCTCGAGCGTATCTGAAAGAGATATAAGGGGATGGTTTGGTGAAATTCGTGCTTACGCTGAAGAAAAAGGATTCATTGATGTTCTCAGCCAACCCAGCAGGATTTTTAATGCAGACGAGACCAATTTTCAGATTTGCCTAAGTTCGGGACTCGTTATAGCTGAGAAGGGATCCAAAAATGTATATAACATCGAACACTCAAATGCGAAAGAATCTATAACTGCTTTATTCACTTTTTCGGCTGCTGGTGACATTTGCTGCCCATTTATTGTGTATCCTTATCAAAGACTACCTGAAAAGATATGCGAGTCTTTACCAGAAGGCTGGGGTATAGGAAAGTCAGACAATGGTTGGATGACTACCGAAATATTTTACGAATTTATTGCCAATGTTTTTCATCCATATTTAGTGAGCAAATCTGTCGAGTTTCCAATCATTTTATATGTTGACGGTCACAAAACTCATTTAAATTATCATTTGAGCCAGTTATGCACCCATCTTCAAATTGAGTTGATAGCTTTGTACCCTAATGCAACCAGAATAATTCAGCCAGCTGACGTCTCTGCATTTAGACCCCTAAAAGTAGGCTGGAGAAAATATTTAAAGAAATGGCAACTATCGAATGAAAATAAAGGGATAAATAAGCTAAATTTTGCTCCTGTACTCAACAAAGTTCTTGAATCTAGTCTGAGGCCAGAAATACTGGTCAATGGTTTTAGAGCCTGTGGTCTTTGCCCGTTTAATCCTGATTCAATCAACTATTCTAAGTGCTTAGGCAAGAATGCTAGTCAGAGAGAAATTTCAAAGGAAATTTCGGATACTGCAACAATCACGTTTGAGACATTCAGAAATATAGCAGGAGCTTCCCTTTGCAAAAGATTTCAAGATGATTTATTTAACACAATGGAACCTCACTTATGCATAATTTATAACCTTTGGAAAGAATTCCAATCAAAAACTCAAAACCATGAAGACATAGTTGATACATCTGATAGACAGTTAGCAAATCAAGGTGAAATATCTTCTCAGTCTCTTAATTTCAGTGATAATACAGCTACACCAACCACTAATTTTAGTGCAGATGGCTGCAATCGGATTAAAGTATTAGACGAAGTACAAGTTATGAACCAAGTTGAAGTCCGTCCACCAGAAATAAATAGTCTCCCTAATACATCTAATAGTGGTCAATCTTCATATCACCTACATAGCCTCCCTGGAACACCTAAAAGTGATCAAACTAGTTATTACCTACATAGCCTCCCTGGAACATCTAAAAGTGATCAAACTACCTCTAACCTACATCTCCCTGGAACATCCAAATCTGGCCCAAATATCTATACGTTGTATGAATCCGTAGCTCCAACCACCCTTACAGTTCTTGAGTGTCCGAAGTTGCATAAAATAAAATCCTCTTTTGGAGAATATTTAGCGTATCCAAAAACACCTATAAGAAAAGGTAAGCGTCAAATAGAGAGACAACCGTTCGCTATTACATCAGACAAATTCAAATTAGCATTACAAAAAAAGCAATCAGTTAAGGAAAATCAATTGAAAGAAAAGGAAAAAAAGAAAATGGAGCGAGAGATGAAGAAGACTGAGAAAAGTAAGAAAGAACAAAGCAAGGGTAAAACTAAAATTACTAAAATTCAACTAACAAACAGGGAACCAGAAGCTATTACTAATGTTGAAATCAATGCCAATGTTTTTCCAGAATCGAAAAGAATCAGCGTTTTAGAGGAAGTTCACATAAAATCCACTGATGTTTGTGCCGTGTGTAAGCACATCATCATTAAATACAAAATTGAATGCAGTGCCTGTCATTTGTTCTTTCATTTGCGATGTGTCCCAGATAGCCACAAAAATAACATTCCCGATGATGCCGATATTATGCTATTTTTATGTCACTTTTGTTACAAAGTTAATGACTCTGATGATGAAAGTTATTCTGATTGTGAAGAATTATATTTAAATGTTCAAAACGCAAGACGAGATCTCAATTTTTAA
- Protein Sequence
- MPKAPKLKYTQENLKKAIAEVQNNEQQLSDRQIAQKYGVPRSTLRFYKRNPGHKTSLGPSPILTPNEEALLEDWIITSARKGFPKNKENILDSVQKFLVENPRPNPFSNNRPGIGWWKAFLKRHSKLSIRTSEGVTKASSSVSERDIRGWFGEIRAYAEEKGFIDVLSQPSRIFNADETNFQICLSSGLVIAEKGSKNVYNIEHSNAKESITALFTFSAAGDICCPFIVYPYQRLPEKICESLPEGWGIGKSDNGWMTTEIFYEFIANVFHPYLVSKSVEFPIILYVDGHKTHLNYHLSQLCTHLQIELIALYPNATRIIQPADVSAFRPLKVGWRKYLKKWQLSNENKGINKLNFAPVLNKVLESSLRPEILVNGFRACGLCPFNPDSINYSKCLGKNASQREISKEISDTATITFETFRNIAGASLCKRFQDDLFNTMEPHLCIIYNLWKEFQSKTQNHEDIVDTSDRQLANQGEISSQSLNFSDNTATPTTNFSADGCNRIKVLDEVQVMNQVEVRPPEINSLPNTSNSGQSSYHLHSLPGTPKSDQTSYYLHSLPGTSKSDQTTSNLHLPGTSKSGPNIYTLYESVAPTTLTVLECPKLHKIKSSFGEYLAYPKTPIRKGKRQIERQPFAITSDKFKLALQKKQSVKENQLKEKEKKKMEREMKKTEKSKKEQSKGKTKITKIQLTNREPEAITNVEINANVFPESKRISVLEEVHIKSTDVCAVCKHIIIKYKIECSACHLFFHLRCVPDSHKNNIPDDADIMLFLCHFCYKVNDSDDESYSDCEELYLNVQNARRDLNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00889122; iTF_00889125; iTF_01221463; iTF_01076347; iTF_00038652; iTF_00038650; iTF_00038651; iTF_00723902; iTF_00723900; iTF_00723901;
- 90% Identity
- iTF_00038652;
- 80% Identity
- -