Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.99 5.5e+03 -2.2 0.4 15 18 96 99 95 100 0.79

2 6 4 2.2e+04 -6.5 6.4 15 19 152 156 151 156 0.82

3 6 0.79 4.4e+03 -1.9 0.9 4 10 187 193 187 193 0.85

4 6 3.9e-08 0.00022 21.5 15.5 1 18 201 217 201 218 0.98

5 6 0.68 3.8e+03 -1.6 2.7 6 10 244 248 243 248 0.89

6 6 2.8e-08 0.00015 22.0 17.4 1 19 254 273 254 273 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.99	5.5e+03	-2.2	0.4	15	18	96	99	95	100	0.79
2	6	4	2.2e+04	-6.5	6.4	15	19	152	156	151	156	0.82
3	6	0.79	4.4e+03	-1.9	0.9	4	10	187	193	187	193	0.85
4	6	3.9e-08	0.00022	21.5	15.5	1	18	201	217	201	218	0.98
5	6	0.68	3.8e+03	-1.6	2.7	6	10	244	248	243	248	0.89
6	6	2.8e-08	0.00015	22.0	17.4	1	19	254	273	254	273	0.98

Coding Sequence: ATGGATAAGTTTAATAAAGCACAGGAAAAGAATATAGCTGCTGCAGGAAAACTAAAAGAGGCTTATGCTTCCAGTTCAGAGGATGAAGGTGAACTGGATGAACAGCACATTCTTGATTTATTGTACAAACACTATCAGGGCACAACAAATGGTCTTAACGCTGGCAAATCCAATGACAAGGCTGTAAATCGTACTGCTACATTCTTGGAAAATACCTTGCATTCGGGTGCAGCAACATGCTTGATATGCATAGGAAGTATACGTCGTGTGGAGTCCATATGGTCATGCAAGAGTTGCTATTGCATATTTCATTTGAACTGCATACAGCGTTGGGCCAACGATAGTGTCATGCAAATGAAAGTAAAGGCAGAACAGCAATCTGGTAATCAGGGACATTATAATCATTTGGGTGAATATGTGCCGCCGAAGCGTCAAAAATCATTGCACTGGTGCTGTCCACAATGCCGGAAAGAATACCAACCAACTGAGCGGCCTACGCAGTATGAATGTTTTTGTAGCAAGGAGATTAATCCGCAACCTCAACCATTTCTGGTGCCGCATTCATGTGGTGAGAATTGTGGCAAACTTTTGCAGCCCAAATGTGGTCATGATTGTAAGTTACTATGTCATCCTGGTCCATGTCCACCCTGTGCACAATTGACACAAAGCTCCTGCCTTTGTGGTAAATCTGCTCAACGCTCAACACGCTGTATTGACAAGAACTGGCAGTGCCAACAAACCTGCCAAGCACTTTTACCGTGTGGCAAACACAAGTGTAACCAAAAATGCCATCGGCCAGGTCAGTGTCCACCTTGTAGCAACAAGAGTTCTcaaaactgcaactgcaagcGTGAGATAAAAGTTGTCAACTGTTCCGAGCCCAAATGGAAG
Protein Sequence: MDKFNKAQEKNIAAAGKLKEAYASSSEDEGELDEQHILDLLYKHYQGTTNGLNAGKSNDKAVNRTATFLENTLHSGAATCLICIGSIRRVESIWSCKSCYCIFHLNCIQRWANDSVMQMKVKAEQQSGNQGHYNHLGEYVPPKRQKSLHWCCPQCRKEYQPTERPTQYECFCSKEINPQPQPFLVPHSCGENCGKLLQPKCGHDCKLLCHPGPCPPCAQLTQSSCLCGKSAQRSTRCIDKNWQCQQTCQALLPCGKHKCNQKCHRPGQCPPCSNKSSQNCNCKREIKVVNCSEPKWK

Sequence clustering based on sequence similarity using MMseqs2