Basic Information

Insect: Zygothrica quintamaculata
Gene Symbol: RREB1
Assembly: GCA_037044455.1
Location: JBAMBS010002268.1:4517-11333[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 0.94 10.4 0.8 1 21 277 297 277 299 0.93

2 12 0.00036 0.031 15.0 0.2 1 23 309 331 309 331 0.98

3 12 8.6e-05 0.0074 17.0 7.3 1 23 337 359 337 359 0.98

4 12 0.1 8.7 7.3 1.7 2 20 622 640 622 642 0.93

5 12 0.0089 0.77 10.6 0.1 1 23 798 820 798 820 0.97

6 12 1.3e-05 0.0011 19.6 0.7 1 23 830 852 830 852 0.99

7 12 0.00089 0.076 13.8 2.0 1 23 858 881 858 881 0.97

8 12 0.0032 0.27 12.1 2.0 1 23 1194 1217 1194 1217 0.95

9 12 9.2e-05 0.0079 16.9 0.3 2 23 1589 1610 1588 1610 0.97

10 12 0.15 13 6.7 6.3 1 23 1616 1639 1616 1639 0.97

11 12 0.009 0.77 10.6 0.5 3 23 1875 1895 1873 1895 0.96

12 12 0.0014 0.12 13.2 4.8 1 23 1901 1923 1901 1923 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	0.94	10.4	0.8	1	21	277	297	277	299	0.93
2	12	0.00036	0.031	15.0	0.2	1	23	309	331	309	331	0.98
3	12	8.6e-05	0.0074	17.0	7.3	1	23	337	359	337	359	0.98
4	12	0.1	8.7	7.3	1.7	2	20	622	640	622	642	0.93
5	12	0.0089	0.77	10.6	0.1	1	23	798	820	798	820	0.97
6	12	1.3e-05	0.0011	19.6	0.7	1	23	830	852	830	852	0.99
7	12	0.00089	0.076	13.8	2.0	1	23	858	881	858	881	0.97
8	12	0.0032	0.27	12.1	2.0	1	23	1194	1217	1194	1217	0.95
9	12	9.2e-05	0.0079	16.9	0.3	2	23	1589	1610	1588	1610	0.97
10	12	0.15	13	6.7	6.3	1	23	1616	1639	1616	1639	0.97
11	12	0.009	0.77	10.6	0.5	3	23	1875	1895	1873	1895	0.96
12	12	0.0014	0.12	13.2	4.8	1	23	1901	1923	1901	1923	0.99

Sequence Information

Coding Sequence: atgctggcagcacagcagcaacagacaacaacaacagcagcagcagcaacaacaacaagcgcaacaacaacagcaacaacaagcttGGGACATGGCATTGATCGATTAGAAATGGAACATCGCCAGCGTCGAGATTCAAGCACATCAGAATCCTCACTGGAGCATTTAGATTTGGGCCGAACACCAAAGAagctgagcagcagcagcggtgcACCGCAGCCAACGTCGACGCCGCACGaaacaaatgcagcagcagcagcagcggcggcgacgacgacaaccacaacaacaacgacgacgacgtcacGTAAACGTAAGCtgcgccagcaacaacagcagcagcaacaattgctctCTGATGAAgatgagcaacaacagcaacaacaacagcagcagcaacaattacagCTGGAACAATCGTTGCCACGGCCACGTCACAAACAGCGACGCAGCGCCAatacaacagctgctgccagCGCCAGCATCGTCGTCGATTATAGCGCCAGCGGCGATGCCAGTTCGTTGCGTAAAAAGTTTCGACTGAATCGCAGCAGCGTCAGCGTCGGCGCCAGCGCCAGCGGCAGTATCAGCGTTAATGGTGAATTATCGGAATCTGGCTTTGTTGATGGCAGCACACATAGCGGTTATTTgctgagcaacagcagcagcagtaacaatagcaatactaatgcacaacaacaacaacaacagcagcagcagcagcaacaacaacaggcatcTAGCAGCAGTTCCGGTGGATCATCTCCACATGGTCTATGCATGTCCAGCGCTGAATCTGGCATCGGTGCCGGCGATGACAATATGAAATATCTCTGCCCCATTTGTGATGTTGTTTCGGCCACGCCCCATGAGTTCACCAATCATATACGTTGCCACAATTATGCCAATGGCGACACTGAGAATTTCACCTGCCGCATTTGCTCCAAGGTGCTATCATCAGCCTCATCGCTGGACAGACACGTTCTGGTGCACACGGGAGAGCGTCCATTCAATTGTCGCTACTGTCATCTGACATTCACCACAAATGGCAACATGCATCGCCATATGAGGACACACAAGCAGCATCAGGCAACAAATCAATCGggcatgcaacagcaacagcaacagcagcagctgcagcaacagccacaacagcagcgaAGACAGCAGCATAATGCGGCTgcagctattgctgttgctggtgctaatgcagcaaatgttgctgcaactgctggtGGCATACAATTGGTTGGAACACGTGCTGAGAGCTATGAGAGTGATGCTAGTTGCTCGACGGATGTGTCCAGTGCGCATAGTCatagcggcagcagcagcagcagttctcaagccaatagcaacaatagcaagaacagccacagcaacaataacaacaacaacaatagtcataaagcgaacaacaacaaccacaacaacaacaacaacaacaatgaggaGTTGGAGCTAGAGGATGAAGCGGAGCCAAGGCAGGAGAGAAGATCAAGAAGAGCCATTGGTAAGCCGCGACGCCTCAagacaacaatcaacaacaacataatcaatgatgatgatgatgaagatgatgatgatgatgtgcaTAATGAGCATGAGGAAGATCAGGAAGATCATCACATGGATAATGATGATATtgttgatgaagatgatgatgatgacagcGTGGATGTGGCACAAGTTATAACCAGCACACCCGATGTTGCCACATTGCTTGCCTCTGAGGGCACATCGCCATCGCATTCACCCGGCCTGCCGCTGCTGCTCAGCTGCCCCGCCTGCCATATGTGCGAATTTGAATCGTTGCCAGCATTGTGCAACCATTTGGATGCACAACATTCGGATATACCAGCCAAGTGCCGCGAATGCGATGTAATCTTTGCCAGCCACCGACAGTTGCAGGCGCACAGTTGCCGTGCCATCAATGGATTGCCATTGATGCCGCCAATGCTGGGCACCAGCTCATCCCCATTGCATAAACAAGAGCTTGAGGATGATGTGGATGATGAGCATGAGCATCATCATGAACTTGACcatgagcaacaacagcagcaacagcaacagcagcagcagcaatcattGAATTCCAGTGAACGTGATGATTTCTTTCAGCAACTTTATCTCAAGGGTAAAGCCAATGCTGGCCAGGCACAGCTACCCTCACCCATTAAGCATGAGCCAGCGGATCGTCAGGATCTAGCTGATATACAATCCATACTCAATATGACCAGCTCCAGCTGCACCTCCAGTTTTCTGCGGAACTTTGAGCAATCCGTGAACACACCCTGCTCCAGTCAATACAGTGTGGATGGACGTGATGGCGAGGAGGAGGCGCAGGATGCCTTCACCAGTGAATTTCGTCGCATGAAATTGCGCGGCGAATTCCCCTGCAAACTCTGCACCGCCGTCTTTCCCAATCTGCGCGCCCTCAAGGGACATAATCGCGTCCATTTGGCGGCTGTTGGTGCCAGCGGTCCCTTCCGCTGCAACATGTGTCCCTATGCCGTCTGCGATAAGGCAGCTCTCGTCCGTCATATGCGCACCCACAATGGAGATCGTCCCTATGAGTGCGCCGTCTGTAATTATGCCTTCACCACAAAGGCAAATTGTGAGCGTCATCTGAGGAATCGTCATGGCAAGACCAGTCGGGATGAGGTGAAGCGTGCCATTGTCTATCATCCGGCGGAGGATGCCAGCTGTGATGATGCCAatagcagcggcaacaacaacaataaatccCGTTTGGCTGACAGCGATTTGGGTGAGCTTAGTTATCGTTCGGTAACGCCGCCGccaccatcaacaacaacaacaaacgcagctgccgcagcagcaacagttgaagCTGCTTCCCAGTTAAAGCATATGTTGCTAGCAgaatcaacaacagcaccaacagttgctgttaaaCCACAACCAGCACTTAAGATACAAGTAAAGAGCCTTGATCAATTGGTGGATAAACCTGTGCCACcgccaacaccaccaacaccagcgATGGATCTCAGCATGGATGTGCTTGATCTAAGCAAGAAGCcatcgacaacagcaacagctgctgctgctgccgccgtaGCACATGAATTGCTCGAGCGAGAGCGTGAACGtgaattgttgctgcagcagcaacaacaacagcaacagcgtgAGCAGCAGcgtgagcaacaacaacagcagcaacgagagcaacagcagcaacaactcttTGGCGCTGCAGATCCTGCATCACAGTACATGCAACAGTTGTTCCGGAATTTGATGCTGCAACAATCGCCGGGATTTCCATTCTTTGGCTTTATGGCGCCACCGCCACCAGTTGGTGCTGTGgataaacagcaacaggcagcagcagcagcaacaaatgccGCAGTgccagcaactgcagcagcagccacagcagcagcagcagcagcagctgccgccgCAGCCGTTGCAGCTGGCctgcccatgcccatgccatTGCCCGGTGTAGGTGTGCCTGTGCCAGCAGGTGGACCCGTCAAGATGGTCATTAAAAATGGCGTCCTAATGCCCAAACAGAAGCAGCGTCGCTACCGCACCGAGCGTCCCTTTGCCTGTGAGCATTGCTCGGCGCGTTTCACGCTGCGCTCCAACATGGAGCGCCATgtgaagcagcagcatccaCAGTTCTATGCGCAGCGTCAGCGCAGTGGACATCATGTGATGCGTGGACGTGCTGCATCATcaaatgcagctgctgcagcggctgctgctgctgcggcggcggcggcagcagcggcTATGAACAATCtcagccagcagcaacagcagcagcagcaacagcaacatggaCATCATGGACATCATGCGCCCATCTCGGAGCAGGTGAAGTATGCGATACTTGCGCAGCAGCTAAAGGCACGCAAGGATACGGATTTGTTGCAACAGGCGCTGGCACATGGCTCCAGCAGTGTTGTGGCCAATCCTCTGCTGCAATTCAATAGCTATAAGACGGCACATGGAAATGGTGGCGCCAATGGGCATCATCGTGCCACACCAATTGCtgtggatgatgatgagcCAAAGCTGATAATcgatgaggatgatgaggAGGAGTTTGACGATGTCGATGAGGATGATGAAATGGAGGAGGAggaacaccagcagcagcagcagcaggaggcaGACCTTGAAATGGATGCAGAtttgcagcaaacagcagaagatgatgatgaagaggaAGAGTTTATAGAagaggagcaacagcaacagcagcagcaggaccaacaacaacaaaatgatgaAGAGCATAAGGGACAGCAGAATGTTAAGGAGCTGGCAACAATGGAGGCAGCCAAAAAGGTGGCTGAAACCATACTGGAACAGGCCATAAAGGCTGGCAAATCCGGCAGTGACTTGTCCTCCGATCAGGCACAAGCCAAACCAATGGCCACGCCCACAACGGCACCAAACACAATGAAAACAATGATTGCCCAAGCTGAATCTGTGGCCAAGTCGCTGAAGGATGTGGCTAGTTCACCGTTTAAGGATGAATCTCAGGATCTGGTGCCTGTTGCCAAGCTGGTCGATAATGCCACTAGCAATCAGGTATCCTTCAATAGCTACTTTCGTCCCAGCGATGTGGCCAATCATATGGAGCAAAGCGATGAGGAGGGTTTGGTTGCCTCTGGCAGTGCCAGCGAAAGCAACAATTCTGGCACCGAAGATGTcaccagcagcaattgcaatgaACCCAAAAAGAAGTCAGCCTATAGCCTGGCACCGAATCGTGTAAGCTGCCCCTATTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTCAGGCGTCACATACTAACCCATACGGGTCAGAAGCCCTTCAAGTGctcccattgcccattgctcTTCACCACCAAAAGCAATTGCGATCGTCATCTGTTGCGTAAGCATGGCAATGTGGAATCAGCCATGTCCGTGTATGTGCCCACCGAGGATGTTAATGAGCCCATACCGGTGCCCAAATCTGTTGAAGAGATTGAACTGGAGGAGCAGCGACGTCGTCAGGCAGCTGAGGCTGAGCAGATCGAAAGGGAAAGGGAGCGGGAAAGAGAAATGGAGCGTGAGCGTGAGCGTGAAAgagaattggaattggagagggagagagacagggagagggagagagagagagagcaacaacagcttatACAGcaattagctgctgctgcacatcTTAGCCAACAAatggctgctgcagctgccgctgccgctgctgctgctgctgctgctgccaacaacaacaacaacaacaattgcagctcTACCCTTGGCagccccaacaacaacaacaacaacaacaacagcagcaacagcgaggCAAATGGCAGCGATTTGCCCTACAAGTGCCATCTATGCGAATTCTCCTTTGGCGAGCGGCTGCAGTGCCTCGAGCATATCAAGCAGACGCATTCCCAGGAGTTTAATCTATTGCTGGCCAAAGGTGCCATTGAAACAGATGCATTGCATgatgcacaacagcaacagcaacaattgacagcagcaactggcTCTGATGATGAATCAtttaatggcaatggcaattcGGGCGGCGCCACACGTTCCGGCAAATATCCGGATTATAGCAATCGCAAGGTTATCTGCGCCTTCTGTGTGCGTCGCTTCTGGTCCACCGAGGATCTGCGTCGCCATATGCGCACCCATTCCGGTGAACGGCCATTTCAGTGCGAGATCTGCCTGCGCAAGTTCACCCTGAAGCACAGCATGTTGCGCCACATGAAGAAGCACAGCGGACGCAGTCACAATGGGGGGGATCAGGGGCAATCCGATTGCTCGGATGATGAGCAGATGGGTACGCCGCCAACAACTCCAAGCCCCATGCCAATGCCaagcgccaacaacaacaataacaacaataataccagcaacaacaacaacaacaacacttgccacaacaacaacaacaacagcaaacagagtCTACGTCTACCCAAGCTGCATGAACTATTGGATAAGGCCAACGAATGGCGCGTCAGTCGCCTGGGTGAGCACAAGGAGAATCTGGGCGAGGCaacaccatcagcagcagccgcagctgcagccgccgccgcagcagcagcagctgttgccagCGGAGATCTAATAGGAAATCTATTGGGCATAAGCGATCAGGGTATACTCAATAAGTTGCTCTCCTCAGCCGATGAGGCGGCCAAGCTGCTGGGCGTGGAAaagtaa
Protein Sequence: MLAAQQQQTTTTAAAATTTSATTTATTSLGHGIDRLEMEHRQRRDSSTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHETNAAAAAAAATTTTTTTTTTTSRKRKLRQQQQQQQQLLSDEDEQQQQQQQQQQQLQLEQSLPRPRHKQRRSANTTAAASASIVVDYSASGDASSLRKKFRLNRSSVSVGASASGSISVNGELSESGFVDGSTHSGYLLSNSSSSNNSNTNAQQQQQQQQQQQQQQASSSSSGGSSPHGLCMSSAESGIGAGDDNMKYLCPICDVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQATNQSGMQQQQQQQQLQQQPQQQRRQQHNAAAAIAVAGANAANVAATAGGIQLVGTRAESYESDASCSTDVSSAHSHSGSSSSSSQANSNNSKNSHSNNNNNNNSHKANNNNHNNNNNNNEELELEDEAEPRQERRSRRAIGKPRRLKTTINNNIINDDDDEDDDDDVHNEHEEDQEDHHMDNDDIVDEDDDDDSVDVAQVITSTPDVATLLASEGTSPSHSPGLPLLLSCPACHMCEFESLPALCNHLDAQHSDIPAKCRECDVIFASHRQLQAHSCRAINGLPLMPPMLGTSSSPLHKQELEDDVDDEHEHHHELDHEQQQQQQQQQQQQSLNSSERDDFFQQLYLKGKANAGQAQLPSPIKHEPADRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSVDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLAAVGASGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDEVKRAIVYHPAEDASCDDANSSGNNNNKSRLADSDLGELSYRSVTPPPPSTTTTNAAAAAATVEAASQLKHMLLAESTTAPTVAVKPQPALKIQVKSLDQLVDKPVPPPTPPTPAMDLSMDVLDLSKKPSTTATAAAAAAVAHELLERERERELLLQQQQQQQQREQQREQQQQQQREQQQQQLFGAADPASQYMQQLFRNLMLQQSPGFPFFGFMAPPPPVGAVDKQQQAAAAATNAAVPATAAAATAAAAAAAAAAAVAAGLPMPMPLPGVGVPVPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRAASSNAAAAAAAAAAAAAAAAAMNNLSQQQQQQQQQQHGHHGHHAPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVVANPLLQFNSYKTAHGNGGANGHHRATPIAVDDDEPKLIIDEDDEEEFDDVDEDDEMEEEEHQQQQQQEADLEMDADLQQTAEDDDEEEEFIEEEQQQQQQQDQQQQNDEEHKGQQNVKELATMEAAKKVAETILEQAIKAGKSGSDLSSDQAQAKPMATPTTAPNTMKTMIAQAESVAKSLKDVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSNCNEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVNEPIPVPKSVEEIELEEQRRRQAAEAEQIEREREREREMERERERERELELERERDREREREREQQQLIQQLAAAAHLSQQMAAAAAAAAAAAAAAANNNNNNNCSSTLGSPNNNNNNNNSSNSEANGSDLPYKCHLCEFSFGERLQCLEHIKQTHSQEFNLLLAKGAIETDALHDAQQQQQQLTAATGSDDESFNGNGNSGGATRSGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGGDQGQSDCSDDEQMGTPPTTPSPMPMPSANNNNNNNNTSNNNNNNTCHNNNNNSKQSLRLPKLHELLDKANEWRVSRLGEHKENLGEATPSAAAAAAAAAAAAAAVASGDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -