Zqui003347.1
Basic Information
- Insect
- Zygothrica quintamaculata
- Gene Symbol
- -
- Assembly
- GCA_037044455.1
- Location
- JBAMBS010000527.1:39526-41043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 99 4.0 1.6 1 20 48 67 48 69 0.77 2 12 0.015 1.3 9.9 0.3 1 23 78 100 78 100 0.94 3 12 0.00012 0.01 16.5 2.1 1 23 107 129 107 130 0.95 4 12 0.00019 0.016 15.9 1.4 2 23 138 159 137 159 0.96 5 12 0.03 2.5 9.0 0.1 2 20 186 204 185 209 0.88 6 12 0.00063 0.054 14.3 0.7 1 23 246 269 246 269 0.96 7 12 0.49 42 5.2 2.8 1 22 276 297 276 297 0.95 8 12 0.00045 0.039 14.7 1.7 1 23 306 329 306 329 0.98 9 12 6.8e-06 0.00058 20.5 0.5 1 23 348 371 348 371 0.97 10 12 0.016 1.4 9.8 0.2 1 23 381 403 381 403 0.94 11 12 1e-05 0.00089 19.9 3.3 1 23 409 431 409 431 0.99 12 12 2.2e-05 0.0019 18.9 0.9 1 23 437 459 437 459 0.98
Sequence Information
- Coding Sequence
- ACAGACAGTGATGGCGAAGCAGATGTTATTGAGCGACGTAGCTATTCATGCGAGCTGTGTAATTCCCCTACTGCCGTATGGCCACGCAAATATCAACTGTATGAACACCACCGACAACAACATACCTGGCTCGAAGCTCCATATGTTTGCCAGCGATGTGACTCACGGTTTCTGAGTGCTCATTTGCTGGATCATCACACTCAAAAACTTTGCCAAAATACCCTAAAGCGTTTTATGTGCGACAAGTGTCCACAGCGTTTCTTTTGGCGTCCCAATCTGCGTGCTCACCTCGTTGAGCACAAAAATAAGCAAGAAAACTATCCCTGTGATCAGTGTTCGCGAAGCTTTCAGGACAAGAGTGCGGTGACAAAGCACAAACTAATGCATCATGATTCAGGGAATCAGCTGCTACCTTGCCGTTGGTGCACACGTACCTTTTATCGGCCAGCTCTGTTGCACAAGCATGTTCAGCGACACGGTTTCAGTGGCGAGGATTTACCGCTGGCAGAGACATTGTTGGCGGATGCCTCTAAGCCATCTGGACCAAAAACAATAGTTTGCAAGCTCTGCGACGTGCAATTTGTTAGTATCGCAGATCTGCGACAACATAATTCAATGCAGGGCCACAGCAAACAAGTCACTGATTATTTGATAAGCACAAAAGAGGGTTTTGAGTTGCAGCTTGATGATGCGGATGATAGTGATGATGAGACAACTGGATCTGGTGGCATAGCGTACAGTTGTGATCTTTGCGGCATAACATTTCAGCGGCGGCGAGATATGAGCGAGCATCAGTATTCGTTGCACACTTTCGAGAAGTTACCACATTCTTGTGAGCATTGCATTTTTAAGACAGTGGACAAGAGATTACTGGAACACCATCTACGCACGCAGTGTTTGAAtcaggaaaaaaaatttaagtgtaCACATTGTGGATACAAGTTTATGTGGCAGGAAAACATGGAACTGCACATGATTACACTTCATGCTAAGTCAAAAAATCAGGCACCGGTTGctacaaaaagaaatagacGCTTTCGATACCAATGTCCACACTGCTGGCGCTCTTTTGTGGTACAGCCCAGCCTGGACAAGCACATACGCGACATGCATGTAGCGAAAAAGAATCCAGGAAAAAAGTATCTTTGCTCACTTTGCGGTCTAGAATCACTGACACCAAACAAACTTAACATACATATGCGTCGTCACAACGGAGAAAAGCCATTCAAATGTGATCTCTGCGACATGTCTTTTACTGTCCATTACGAGCTTAAGGTTCACCGGCGTAAGCACACTGGCGAAAGACCTTATCAGTGTACATTCTGTGCCAAAGATTTCGCAAGACCGGATAAGCTAAGGCGCCATGTTTATATGCACAGTGTAAAGCGTTAA
- Protein Sequence
- TDSDGEADVIERRSYSCELCNSPTAVWPRKYQLYEHHRQQHTWLEAPYVCQRCDSRFLSAHLLDHHTQKLCQNTLKRFMCDKCPQRFFWRPNLRAHLVEHKNKQENYPCDQCSRSFQDKSAVTKHKLMHHDSGNQLLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADASKPSGPKTIVCKLCDVQFVSIADLRQHNSMQGHSKQVTDYLISTKEGFELQLDDADDSDDETTGSGGIAYSCDLCGITFQRRRDMSEHQYSLHTFEKLPHSCEHCIFKTVDKRLLEHHLRTQCLNQEKKFKCTHCGYKFMWQENMELHMITLHAKSKNQAPVATKRNRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -