Basic Information

Gene Symbol
stc
Assembly
GCA_907165275.1
Location
OU015659.1:10134910-10152125[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.7e+04 -4.3 1.6 15 19 430 434 429 434 0.81
2 14 0.033 4.4e+02 1.6 1.5 2 10 462 470 462 470 0.93
3 14 3.6e-05 0.48 11.1 18.1 4 19 478 493 476 493 0.93
4 14 6.8e-09 9e-05 23.0 11.0 1 19 529 547 529 547 0.98
5 14 2.2e-05 0.29 11.7 11.7 1 18 590 607 590 608 0.98
6 14 1.1e-05 0.15 12.7 12.2 1 19 649 671 649 671 0.88
7 14 0.0049 65 4.2 7.2 1 11 711 721 711 722 0.94
8 14 0.16 2.2e+03 -0.6 0.3 4 10 726 732 725 732 0.93
9 14 3.6e-06 0.048 14.3 14.0 3 19 740 756 738 756 0.92
10 14 0.0023 31 5.3 11.9 1 18 795 811 795 812 0.86
11 14 1.3 1.8e+04 -3.6 1.3 8 13 817 822 816 823 0.79
12 14 2e-08 0.00027 21.4 12.9 1 17 848 866 848 872 0.83
13 14 5.4e-05 0.72 10.5 5.7 1 13 878 889 878 890 0.95
14 14 0.21 2.8e+03 -1.0 0.4 7 12 932 937 926 937 0.83

Sequence Information

Coding Sequence
ATGACGGAGTGGAATAACTCTTACGCATACAACGATCAGTATGAAGGATCATCTAATGGTGACAGACAATACCCAAATCAAACATACTTAAATGACCCCAACAAACGTTATGATGCAAGCAACCATTATGATCAGTATTTGACTCAGATGCATGGTGACAACAGTGCCACACCTGGCGACACAGCCAGCTATAACAGTGTACCATATTTAAATTATCCAGTTAACCAATATAACTATCAAGGTATGCCAACAACTTCCCAAAACGCTCAACTTCATGATGTTTACAATTATGGTCAAATCACATCTGTTTCAAATAGGTTAGATGATTATAATCAAGCTACGTCATCTAATACTGCTGTATATTCAAATGATATAGCCTTGAAATCAAATTTAACACCAACAGCTATAGAGTTTGTGCCAAAAAGTTCAATGCAGCCATCTATGAGCAATCAAAATGTTAGCATATCAGAACCTGTCACTTTGAGTGAGCTTAAAATTGGTCACTCCAATAATGAAACTAATTGGAGGGAAAGACCTCAAAATTCCAAGAAAAGTAGTCAAAACAGGTTTTTTAATCAGTCTAACAGAAACATTGAACATAATGTATGTGCTCAAGAGAACAGCAGAGGTCAAGAGAACATCAGAGGACAAGAGATTAGTGGAGGACAAGAAAATAATAGGTACAATAGAGAATTGAGAAACTGTAACCAGGAGGGTCCTACAAACAATGATTACAACCTTAGCAATGAGTCAAACAATCGAAATGGTAGGAATAAACAAAACTCCAAAACAAGAAACAAAGAGTCTGATAACCCTCGTACTTTTTATAATAGCACAATTAGTAAAGGTCATGATCCAAGAAATAGTAGAGGTGAGGGTTCAGGAAGACAGAGAGGTAATTGGGCAGGCAGCCAAAGACTGCGCTCTACACAAAACAACACTGCTGATTATGAGCAATATGCTAACACATATTTGTCACAACGCGAGGAAAGATATGAAAGGCAGAATAAGTTAGAGGCCCCAAATAGAGAAACTGCCAATGTTTCTAGCCCTATGCGAAGCAAAAGTAAACAAAAATTTGTCCTAGATCAAACAGCCAACACTGAGATGACACAACGTGAACGTCTAAGTGAGCAGTTAGACAATGGAACCCTGGAGTGCCTTGTGTGCTGCGAGAGGGTTAAACAAATAGACTCTGTGTGGTCTTGTTGCAATTGCTACCATGTGCTGCATCTGCGATGTATCAGGAAGTGGGCTTTTAGCAGCTTGGTCGAGGGCAAATGGCGTTGCCCCGCCTGCCAGAACACGTCCGCGTCGGTCCCGGCCGAGTACCGCTGCATGTGCGGTGCGGTGCGCGCGCCCGAGTACTCGCGCGGCGGCGGCGGCGCGCACACTTGCGGCCAGGCCTGCCGCCGCGCGCGCGCCTGCCCGCACCCCTGCACGCTGCTGTGCCACCCGGGGCCCTGCCCGCCCTGCCAGGCCACCGTCAACAAACAATGCGGGTGCGGTGCGGAGACCCGCGCGGTGCTGTGCAGCAGCAAGCTGCCGCAGGAGTGCGGGCGCGAGTGTGGGCGCGCGCTCGACTGCGGCGTGCACCGTTGCGCGCGCGCCTGCCACCAGGGCGCCTGCGACCCTTGCCGCGAGACCGTCACGCAAGTGTGCTACTGTCCGGCGGGGAAGGAGCGCGCCGTGGCGTGCGCGTCGGCGGGCGAGGGCGAGGCGCGCGCCAGCTGGTCGTGCGGCGCGGCGTGCGCGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCCGCGTGCCACGCGCCGCCGTGCCCGCCGTGCGCGCTGCGGCCGCTCGCCGTCACCACGTGCCCCTGCGGCAAGACGCTGCTGGAGAAAGGCAAGCGCACCTCGTGCACGGACCCCATCCCGCTGTGCGGGAACATCTGCGCCAAGCCGCTGCCCTGCGGGCCCGCCGGCGACCGCCACTTCTGCAAACAGGACTGCCACGAGGGCGCGTGCCCGCAGTGCCCGGAGACGACGCAGCTGCCGTGCCGCTGCGGGCACTCCAGCCGCGAGGTGCCGTGCGCCGACCTGCCCGCCGCCTGCAGCGGCGTGCTCTGCAACAAGAAGTGCAACAAGAAGCTGTCGTGCGGCCGGCACCGCTGCCGCAACGCGTGCTGCGCGGACACGGCGCACCGCTGCGGCGTGGTGTGCGCGCGCCTGCTCTCCTGCCAGCTGCACCGCTGCGAGGAGTTCTGCCACACGGGCCACTGCGCGCCCTGCCCCAGGCTCGGGTTCACGGAGCTGTCGTGCGCGTGCGGCGCGGAGGTGGTGCTGCCGCCGGTGCGGTGCGGCGCGCGGCCGCCCGCCTGCTCGGCGCCGTGCGGCCGCGCGCGGCCCTGCGGCCACGAGCCGCTGCACGCGTGCCACGCGGGCGCCTGCCCGCCGTGCGTCGTGCTCACCACCAAGCGGTGCCACGGCGGCCACGAGGAACGAAAAACGATTCCTTGCTCGTTGGAGGATTTTTCTTGCGGTCTGCCGTGCGGCAAGCCGTTGCCCTGCGGGAAGCACACCTGTATCAAGATATGCCACAAGGGGCCCTGTGACACCGGCAAGTGTACGCAGCCGTGCACCGAGAAGCGGCCGAGCTGCGGCCACGAGTGCGCGGCGCCGTGCCACGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGGCGCGGCGTGCCCCAGCGCGGCGCCCTGCCGGCGCGGCGTGCGCGCCACGTGCCCGTGCGGCCGCCGCAGCGCCGAGCGGCCCTGCCACGAGAACGCCAGAGACTACGCCAAGATAATGAGCTTGCTGGCCGCCACCAAGATGCAGGAGAGCGGCTCCGTGGACCTGTCAGAGGTGCAGCGGCCCGGCTCCATGCTCAAAACCCTGGAGTGCGACGACGAGTGCCGCATGGAGGCGCGCAGCCGGCAGCTGGCGCTGGCGCTGCAGATCCGCAACCCGGACGTGTCCGCCAAGCTGGCGCCGCGCTACAGCGACCACGTGCGCGCCACCGCCGCCAAGGAGCCCGGCTTCGCGCAGCAGATACACGACCGCCTCACCGAGCTCGTGCAGCTCGCCAAGAAGTCGAAGCAGAGGACCCGCTCGCACTCGTTCCCGTCCATGAACTGGCAGAAGCGCCAGTTCATCCACGAGCTGTGCGAACAGTTCGGCTGCGAGAGCGTCGCGTACGACGCCGAGCCCAACAGGAACGTCGTCGCCACCGCCGACAAGGAGAAGTCGTGGCTGCCGGCGATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCGGGCAAGCGCCGCGTGCCCGGGCCCGTGCTGCGCGCCGCGCCCAGCGCCGCCGCCGCCAGGTCGACAGGCAGTTGGGCGAAGTTGACGTCGACGAACGCGTGGGCGGCGCGCAGCCAAGCCAAGCCGCAGCCGCAGCCGCAACCAACGCCACAACCGCAACAACAACGCCCGACACCTACCCCAAACAAAATAGACTATTTCGACAACCCGCCCGAATAA
Protein Sequence
MTEWNNSYAYNDQYEGSSNGDRQYPNQTYLNDPNKRYDASNHYDQYLTQMHGDNSATPGDTASYNSVPYLNYPVNQYNYQGMPTTSQNAQLHDVYNYGQITSVSNRLDDYNQATSSNTAVYSNDIALKSNLTPTAIEFVPKSSMQPSMSNQNVSISEPVTLSELKIGHSNNETNWRERPQNSKKSSQNRFFNQSNRNIEHNVCAQENSRGQENIRGQEISGGQENNRYNRELRNCNQEGPTNNDYNLSNESNNRNGRNKQNSKTRNKESDNPRTFYNSTISKGHDPRNSRGEGSGRQRGNWAGSQRLRSTQNNTADYEQYANTYLSQREERYERQNKLEAPNRETANVSSPMRSKSKQKFVLDQTANTEMTQRERLSEQLDNGTLECLVCCERVKQIDSVWSCCNCYHVLHLRCIRKWAFSSLVEGKWRCPACQNTSASVPAEYRCMCGAVRAPEYSRGGGGAHTCGQACRRARACPHPCTLLCHPGPCPPCQATVNKQCGCGAETRAVLCSSKLPQECGRECGRALDCGVHRCARACHQGACDPCRETVTQVCYCPAGKERAVACASAGEGEARASWSCGAACARVLACGAHVCRAACHAPPCPPCALRPLAVTTCPCGKTLLEKGKRTSCTDPIPLCGNICAKPLPCGPAGDRHFCKQDCHEGACPQCPETTQLPCRCGHSSREVPCADLPAACSGVLCNKKCNKKLSCGRHRCRNACCADTAHRCGVVCARLLSCQLHRCEEFCHTGHCAPCPRLGFTELSCACGAEVVLPPVRCGARPPACSAPCGRARPCGHEPLHACHAGACPPCVVLTTKRCHGGHEERKTIPCSLEDFSCGLPCGKPLPCGKHTCIKICHKGPCDTGKCTQPCTEKRPSCGHECAAPCHAGAGAGAGAGAGAGAGAGAGAACPSAAPCRRGVRATCPCGRRSAERPCHENARDYAKIMSLLAATKMQESGSVDLSEVQRPGSMLKTLECDDECRMEARSRQLALALQIRNPDVSAKLAPRYSDHVRATAAKEPGFAQQIHDRLTELVQLAKKSKQRTRSHSFPSMNWQKRQFIHELCEQFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAAPSAAAARSTGSWAKLTSTNAWAARSQAKPQPQPQPTPQPQQQRPTPTPNKIDYFDNPPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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