Basic Information

Gene Symbol
-
Assembly
GCA_907165275.1
Location
OU015667.1:9953888-9963758[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0039 0.29 12.2 0.3 1 23 304 326 304 326 0.96
2 11 0.00015 0.011 16.7 1.2 2 23 334 355 333 355 0.95
3 11 0.15 11 7.3 2.3 1 23 359 381 359 381 0.98
4 11 0.00041 0.03 15.3 0.8 1 23 386 409 386 409 0.98
5 11 0.0014 0.1 13.7 0.1 1 23 413 436 413 436 0.95
6 11 0.13 9.3 7.5 0.0 3 20 455 472 454 474 0.94
7 11 0.0058 0.43 11.7 1.0 3 23 488 509 488 509 0.98
8 11 1e-05 0.00077 20.3 0.5 1 23 562 584 562 584 0.99
9 11 2.9e-05 0.0022 18.9 1.8 1 23 590 612 590 612 0.97
10 11 0.0091 0.68 11.1 3.2 1 23 618 640 618 640 0.98
11 11 8.9e-05 0.0066 17.4 0.3 1 23 646 669 646 669 0.98

Sequence Information

Coding Sequence
ATGGGTGACATCAAAGCTTGCAGGATATGCTTAGTTATGGATGTGAAAATGTTTAATCTACAGTCCTATCCGCTGAATAACCATTATGAATCTATTATTGGAGCAAGTCCGCTGAACATGACAGAACTCCCTTCTCATGCATGTTATGAATGTGCTGCATTAGTGAACAAGTACTATTTGTTCAGACAAAAGTGTTGCCATGCCCAAAATGTTCTGTACGATATTCTTAACGCCGATGGAAGGGTAAAAGAATCAAAGTTAAGAAAACTGAACAGGAGTGACCTCAAATTAACATCAAAACTTTCCACCCACTTGTTTCTTGATTTGAATACAATAGATTGTGTTCATACAGAACAAAATAATTGTGTTGTAAAAGAAGAATTAATGGACAATGAAGAAAATTATGAAACCAAATTCTCTATAGAAATAGACCAAGGTGATATAAAGCATGAACACGATAATAGTTTTCCATCAGCAGACCACCACACTAGTGATGATGATGAACCTCTATCATTACATAAGAGTACTTTACAGAAGAATAAAGATTCAGAGAAAAAGAAGAGAGGTAGAAAAAAGAAAATTTTCGAAGTCAATGACAAATGGGATGAGACTGATCAGTTTATAGATTTTGATGGTATAGAGGTAACAGCCGATACGTCGATGTTGCCGCTGGAAATAAATCAAATTGTGGAGACCAAAAAGAAGAGAGGTCGTCCCAGGAAGGCTGACAAGGCCAACGTTCCCAGTGAAAAAACCAAAGCGCGGCAACGTAGGACCGACAACACGGGCGGCGTGGTCGTGGACGAGTCGAATATAGAAGATTATGTTACAATCGTTAATTTAACGGTTGAGGAGCAAATGAAAGAGATCGAAGACCGCAAACAGAGCTCCAACTATAAGAACGCTCCCTTCCAGTGCACCCTCTGCTACAAGGGGTTCATAGACACGGACGCGTGGAAGAATCACGTCGGGAAACACGACCCGAGCGCCGGCGACGTGGAGTGCCCCATCTGCAAGTTTCGCTTCAAGACGAAGCGCACGCTCATGAAGCACGCGTCCAACCACGAGCGGAAGTACCACTGCAAGGCCTGTCCGTACGTCTCCAAGACCACCACCCAGGCGAAGCAGCACCAGCGCTGGCACAAGGGAGTCACCTACAAGTGCCAGTACTGCGACGAGGTCTCCTCTAAGTGGACTTCGTACCTGTCGCACGTGCGCATCAAGCACCCGTCCGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTTGTGAGCAAGCTCGGCCTCGCCATGCACCGCACCATGATGCACAAGGACCTGGCCGACAAGCCAGAGGGCGAGGCAGGCAAGGAGCCGGGCCCGTACTGCGCCGAGTGCGACGTACAGTTCGCCTCGCACGAGGCGTGGAAGCGGCATCTCGTTGCCTCGCCCAAGCACGCGCAGAGCAAGCACCTTAATAACGGTTGCCGCGTGTGCGGCTCGACGTTCCCTACCGGCGAGCAGCTGCGCGTGCACCACCGGCGGGAGCACGCGCGCCCCCGCCCCAAGAACTACGGCAAGAAGCCCGCCGCCGGCGCCTGGCCCACCAACTGCGAACACTGCGGCGAGCAGATAATGAACGCGCGCGACCACTGGACGCACTTCCGGCGCGCGCACCCCGATAAGAGTTACCCAATACAGAAGAACTACGTGTGCGACGTCTGTGGCAAGAGCTTCCGGGGCAACGCGTTCCTGGTGTACCACAAGCGCACGCACACGGAGGAGCGCTCGTTCGCGTGCGCGCAGTGCGGCAAGGCGTTCCACAACCGCACCAACCTGCAGATGCACGAGAAGACGCACTCGGACGCGCGCCCCTACCCGTGCGCCGTCTGCCACAAGGCGTTCAAGTGCAAGGGCGCGCTCGACAGGCACTTCCGGAGTCATACGGGCGTGAAGCCGTACACGTGCGAGGTGTGCGGCAAGGGGTTCGGCCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTGCGCCAGCCCGCGCCCTACGTGAGCCGCGCGCGCCAGGAGCGCCGCCGCGCCGCCGCGCAGCCCCCCGCGCAGCCCCCCGCGCAGCCCGCGCCGCCGCACCCGCCCCCGCTGCAGCCCGCGCCGCCCGCGCCCCCGCACTGGGTGTTGGCCAGCATGAACTGA
Protein Sequence
MGDIKACRICLVMDVKMFNLQSYPLNNHYESIIGASPLNMTELPSHACYECAALVNKYYLFRQKCCHAQNVLYDILNADGRVKESKLRKLNRSDLKLTSKLSTHLFLDLNTIDCVHTEQNNCVVKEELMDNEENYETKFSIEIDQGDIKHEHDNSFPSADHHTSDDDEPLSLHKSTLQKNKDSEKKKRGRKKKIFEVNDKWDETDQFIDFDGIEVTADTSMLPLEINQIVETKKKRGRPRKADKANVPSEKTKARQRRTDNTGGVVVDESNIEDYVTIVNLTVEEQMKEIEDRKQSSNYKNAPFQCTLCYKGFIDTDAWKNHVGKHDPSAGDVECPICKFRFKTKRTLMKHASNHERKYHCKACPYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSSKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLAMHRTMMHKDLADKPEGEAGKEPGPYCAECDVQFASHEAWKRHLVASPKHAQSKHLNNGCRVCGSTFPTGEQLRVHHRREHARPRPKNYGKKPAAGAWPTNCEHCGEQIMNARDHWTHFRRAHPDKSYPIQKNYVCDVCGKSFRGNAFLVYHKRTHTEERSFACAQCGKAFHNRTNLQMHEKTHSDARPYPCAVCHKAFKCKGALDRHFRSHTGVKPYTCEVCGKGFGQSNSRKLHVRTVHLRQPAPYVSRARQERRRAAAQPPAQPPAQPAPPHPPPLQPAPPAPPHWVLASMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01569619;
90% Identity
-
80% Identity
-