Zfil015498.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- -
- Assembly
- GCA_907165275.1
- Location
- OU015678.1:5298477-5306502[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.5e-05 0.0026 18.7 0.8 1 23 142 165 142 165 0.97 2 13 0.24 18 6.6 1.8 2 23 174 195 173 195 0.94 3 13 3.3e-06 0.00024 21.9 0.4 1 23 201 223 201 223 0.98 4 13 0.00039 0.029 15.4 0.3 1 23 229 251 229 251 0.97 5 13 0.0087 0.64 11.1 0.6 2 23 259 281 258 281 0.94 6 13 2.3 1.7e+02 3.5 0.5 3 23 289 310 287 310 0.94 7 13 0.0029 0.22 12.6 2.3 1 23 316 338 316 338 0.99 8 13 0.00084 0.063 14.3 3.9 1 23 350 374 350 374 0.94 9 13 5.4e-06 0.0004 21.2 1.1 2 23 387 408 386 408 0.96 10 13 8.2e-07 6.1e-05 23.8 1.5 1 23 414 436 414 436 0.98 11 13 6.1 4.5e+02 2.2 0.8 6 23 445 462 443 462 0.83 12 13 7.4e-06 0.00055 20.8 1.6 1 23 467 490 467 490 0.98 13 13 5.7e-05 0.0042 18.0 0.5 1 23 496 519 496 519 0.95
Sequence Information
- Coding Sequence
- ATGCTCACTGGACTTCCAGAGAAATATCATCCACTTGTCGTGGCCATTGAGCATTCTAATACGAAAGTCACCACGGAAAATGTGGTGACCGCTCTACTCAAGGAAGAATCACGAGCTGTACCGTCCAATGCCAAAAGATCTCCAGATACAGCACTATATACCAAGAACCAAAGGAAGAAGAAGTTATGCTCATATTGTAAAAAGTTAGGGCATTTAGTGAGTTCACAAGATTGGTTCCTTGATTCTTGTGCAAGTTCCCACATGAGTAATAGAAGAGAATGGTTCGAGTCCTTATCACCTCACATTACTCCCATCACAGTGGCAAACGAGGAGACTTTACTAAGTCATGACGAAACGAAGTCCACCAAATCGAAACCTACTGACCCTTCAATAGTGGCAGTAGGACCCGATTCGTCCAAATCGTTCGATTGCAAGGAATGCGGCAAGCTGTTCAAAAAGCTAAACTCTATCCAGGCGCACATGAGAAGAGTGCACTCAAAAACACCTCGCACCATGCAAAAATGCCACTTTTGCGATGAGGAGTTTCCCAGCTACATACTCCGCTCGAAGCACAGCATCACACACTTCGCCGACAACAAGTTCCAGTGTCAAGTGTGCGGGAAAACGTACACGAGCCTCGCCGGTCTAAAAACACATTTGAACGAGCACACAAAACGAAAAATATTCATATGCGACTATTGCAATAAGGAGTTTTTGCGCAAGAACGCGCTCTTGAATCACATCGAAATCCACATGGGCACCAGAGTGAGACTGGTGTGCGATCTGTGCGGTGTGCAGTGCAACGACAACACCCAGCTCAGGCTCCACACGAGCTCCGTCCACGAGAAACTGAGGCCGTTCGGCTGCCAGGAGTGCGACCTGTGGTACGCGACCAAACGCCGTCTCAAGTACCACGTGATGCAAAAGCACACGGGCGATATGCCGTACAAGTGCGAAGTGTGCGCCAAACACTTCCCGGCGATGGAACACCTGAGAGGCCACCAGAAATCGCACGTGAGAGCCGGCGCACAGAAAGCGAAGAAAATCTACACCTGCCCCCACTGCGAAACCAAATTCGAGTCGAAGTCCAGATATCTGTCGCACCGGCGCACGTTCGTGCACTTGCATCTGAACAAGAAAATACTCGAGAAAAACCTCAGGTGCGAGTACTGCGACAAGATATACGAGAACAAGTACTCGTACAACCGACACATGAACCTGCATCTGGGCATCAAGAATTACTCGTGCCAATACTGCGATAAAAAGTTCATCGATAAGAGCAGCGTCGCCCGCCACATTAAGCGGCACGAGGCCCCCGCTGACAAGCAGACCTGCACAGTGTGCCTGAGGAAAGTGAGGAACATAGAGAAGCATATGAAAGGGCACGTGGAGAAACCGTACGAGTGTCAGTATTGCAATAGAAGTTATCCGGAAAACAACACGTTGACCCGACACATAAAGACGAAGCATTTGAATATAAGGCCGCACGTGTGTCCGCTGTGCCCGGCGAAGTTCGTCCGACCGGACGCGCTGAAGCGGCACAATCAGAGGAAGCACAACGGCGTCGACGCGAAACCGCCGCCGATTGAGGTGGATTTGGGACAAATACAAACGTTCAAAATCAAAAAGGTTTAG
- Protein Sequence
- MLTGLPEKYHPLVVAIEHSNTKVTTENVVTALLKEESRAVPSNAKRSPDTALYTKNQRKKKLCSYCKKLGHLVSSQDWFLDSCASSHMSNRREWFESLSPHITPITVANEETLLSHDETKSTKSKPTDPSIVAVGPDSSKSFDCKECGKLFKKLNSIQAHMRRVHSKTPRTMQKCHFCDEEFPSYILRSKHSITHFADNKFQCQVCGKTYTSLAGLKTHLNEHTKRKIFICDYCNKEFLRKNALLNHIEIHMGTRVRLVCDLCGVQCNDNTQLRLHTSSVHEKLRPFGCQECDLWYATKRRLKYHVMQKHTGDMPYKCEVCAKHFPAMEHLRGHQKSHVRAGAQKAKKIYTCPHCETKFESKSRYLSHRRTFVHLHLNKKILEKNLRCEYCDKIYENKYSYNRHMNLHLGIKNYSCQYCDKKFIDKSSVARHIKRHEAPADKQTCTVCLRKVRNIEKHMKGHVEKPYECQYCNRSYPENNTLTRHIKTKHLNIRPHVCPLCPAKFVRPDALKRHNQRKHNGVDAKPPPIEVDLGQIQTFKIKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -