Zfil000472.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- L
- Assembly
- GCA_907165275.1
- Location
- OU015650.1:7205800-7209821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 1e+02 4.2 4.8 1 23 3 25 3 25 0.97 2 17 8.1e-06 0.0006 20.7 4.1 1 23 31 53 31 53 0.99 3 17 2.5e-05 0.0019 19.1 0.1 1 23 59 81 59 81 0.98 4 17 6e-06 0.00045 21.1 0.1 2 23 103 125 102 125 0.96 5 17 3.7 2.7e+02 2.9 0.1 9 23 155 170 151 170 0.93 6 17 0.29 22 6.3 0.0 3 23 227 247 226 247 0.97 7 17 0.024 1.8 9.7 0.0 2 23 261 282 260 282 0.88 8 17 8e-05 0.0059 17.5 1.5 1 23 290 313 290 313 0.91 9 17 0.0013 0.095 13.8 0.1 1 23 318 341 318 341 0.94 10 17 0.0021 0.16 13.1 0.2 1 23 401 426 401 426 0.94 11 17 0.00019 0.014 16.4 0.1 2 23 487 508 486 508 0.96 12 17 0.053 3.9 8.7 0.0 1 23 516 538 516 538 0.98 13 17 1.7 1.3e+02 3.9 1.1 2 23 546 567 545 568 0.93 14 17 9.2 6.8e+02 1.6 0.0 3 23 575 595 574 595 0.93 15 17 0.84 62 4.9 0.3 1 23 642 664 642 664 0.94 16 17 0.00091 0.068 14.2 0.2 1 20 672 691 672 694 0.95 17 17 0.047 3.5 8.8 0.4 1 23 701 723 701 723 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTCAGATGCGAATTCTGCGCGCGTCTGTTCAAGCACAAGCGGTCGCGCGACCGACACGTCAAGCTGCACACGGGCGACCGCAAGTACCGCTGTGCACACTGCGAGTCCGCTTTCTCGAGGAGCGACCATCTGAAAATCCACATGAAAACGCACGACAACCAGAAACCTTTCCAGTGTACGGTGTGCAACCGCGGGTACAACACCGCCGCGGCGCTCACCTCGCACATGCAGGGCCACAAGCGGGACCGCGACGGGCGCGGGGGGCGGGAGGGGCGGGAGCCTGACCGCCGGAGGTCACTGCGATGCCTTCGATGCGGCGAAGCATTCCGGCGCCCTGATTTACTCCAGGCTCATATGTCAACGGTTCATGGCGTCGAGTCAGTTGTGACGCCACCGAGACGCGTAGCTTCGCAACCTCCGCCCGCCATGCTGGCCTGTATATACTGCACTCGCGACACGTTCACCAGCATGGATCAACTGCAGTTGCACGTGCGGGCAGCACATTCGGCGCTTTTAAACGGTGAAACAACAACAGATTTGGTCGTAGATCAGCCTACACCTACCGACTTGAGCAGACGAAAGCCACCGGAAGAAGCTCCTATCGCTAAACGAGCACGCTATGACTCCGATACGCCGAATCCGCATACGGCATTATCACCGAGCACTCTTTTGTGTAATCAGTGTGACGCTGCGCTACCAGACTTTGAAGCTTTCCGAGCTCATCTCAAAGGACACCTCGAGAAAGGAGGAGAACTGAACAGATCGAGTCCGACCCCGTGTCCGCACTGTGGCGCTACCTTCGCAGACGCCGCCGCCTCTGAACGACACCTCGTCGCTCATTACCTGGCTGTTTCCTGCGAATACTCGTGCCACAGCTGCGCGAGGTCTTTTTCAACACCGGACGATTTGCAGAAGCATCTGTTTGACCTACACACGCATCATCTTTACCGCTGCACTTTATGCAAGGAGATATTTGACTCGAAAGTGGCTTTACAGGTGCATTTTGCTGTAGCTCACAGTGGTGAGAACAAGATGTGGGTGTGTCGTTCGTGCGGGGCCGGTGGCGGCGCGTTGCGCACCGAGGAGGAGGGCGCGGCGCACGTGCGCGCCATCCACGCGGCAGCGCGGTGCGGCTGCGGCGCCGTGCTGCCGGGCGCGCGGGCCATGCAGGCGCACCACGCCGCCCACCACACCTACCGCTGCCCCGTGCCCGCCTGCACCGAAACATTCGCCGTGCAATACCTGCTGGAAAGGCACATGCACGCTCTCCACGCCTCGCCGCATCAGAGCTCAAACGGAGATTTGTCTAGAGTAAAAGGACCGGAAAACAATAATATCGTATCGGATAGTGGCGATGGCGCATGTTCACCTTGCGCTGTGAGCGCTGAAGGGAACGCAAGTGGGATTAGTGTTCCTGAAGAGCGTCGTCGCAAGAACGGTGCGGTGGCTCTGCAGTGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTGGAGGCGCACACGCGCGCGCATTCGGGCGCCGCCGCCGCGAGGCATAAGTGTCTCATCTGCGATGAGGTCTTGCCGTCCGCCGGTGTGCTCGCTGAGCACAAACTTACACATTGCAAGGTAGTTGCTGGAGACACGTGTTCGAGATGCCGTTCCCGACTTCCGACCGAAGAAGCTTTCCTCAATCACATGGCGAGACATCACCCTGCGCTTCCCGCGCCCTGTGTGATTTGCCGACAAACACTCGCGTCTGAAGCCGAGGCTCGTCTTCATGCTCGATTTCATTTAAGACCTACCGGGGATGAGCAGAGATGTGCAATTTGCCTCCGTACTTTGCCTGAAAGTGAAGCTGGCGAGGGGGCTCGCGCTTGCTCCGCTTGCTACGCACGGCATGCGACGCCGCGTCCACCTGTTCCTGTAAATCACGACTGCCGGTTGTGCCGGCGCGCTCTCGGCTCCCCGACGCGGCTTCAAGCGCATCTTATCGAGCATACGTTCGCGGGTATCGGGGCATTCACTTGTTACTTGTGCTCTGCGGTATTCACGAGTGCTAGTGGCTTGCAACGACACCTGCCCGAGCACGCTACGGCGCCGAGGCCCTACGATTGTAGCCGTTGCGGAATAAAGTTTTTCTTTCGCGCGGAACTGGATAACCATGCGTTTGTACATCTCGAAGAGGCAGAAATAGCGCAAAGAGCTTTTTATGAGGCCTACGCTAGAGGTGCAGCGTCCGCTTGGGCCGCGTTAGCGCCACCGGAGCCAGCCCAGCCGCCAGTGTCGACTCCTACGTCTACAATGGCGGATTTTCCTTTGAAACGAGAACCGGAAATTAAAGAAGAGAAAAATTGTGAGGAATACATTGAAGTGTCATCACCTCCGCCAGCGCGACTGTCGCCCAGCACCGGCGCCGCATCGCCGTTACCTGTGGTGAAGCAAGAGAAACCCGACGAAGACTGA
- Protein Sequence
- MPFRCEFCARLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGRGGREGREPDRRRSLRCLRCGEAFRRPDLLQAHMSTVHGVESVVTPPRRVASQPPPAMLACIYCTRDTFTSMDQLQLHVRAAHSALLNGETTTDLVVDQPTPTDLSRRKPPEEAPIAKRARYDSDTPNPHTALSPSTLLCNQCDAALPDFEAFRAHLKGHLEKGGELNRSSPTPCPHCGATFADAAASERHLVAHYLAVSCEYSCHSCARSFSTPDDLQKHLFDLHTHHLYRCTLCKEIFDSKVALQVHFAVAHSGENKMWVCRSCGAGGGALRTEEEGAAHVRAIHAAARCGCGAVLPGARAMQAHHAAHHTYRCPVPACTETFAVQYLLERHMHALHASPHQSSNGDLSRVKGPENNNIVSDSGDGACSPCAVSAEGNASGISVPEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAGVLAEHKLTHCKVVAGDTCSRCRSRLPTEEAFLNHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPTGDEQRCAICLRTLPESEAGEGARACSACYARHATPRPPVPVNHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSASGLQRHLPEHATAPRPYDCSRCGIKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPAQPPVSTPTSTMADFPLKREPEIKEEKNCEEYIEVSSPPPARLSPSTGAASPLPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- -
- 80% Identity
- -