Zfil015500.1
Basic Information
- Insect
- Zygaena filipendulae
- Gene Symbol
- -
- Assembly
- GCA_907165275.1
- Location
- OU015678.1:5314903-5318436[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6e-06 0.00012 22.9 0.6 1 23 41 64 41 64 0.97 2 13 0.3 22 6.3 2.7 2 23 73 94 72 94 0.93 3 13 2.2e-06 0.00016 22.5 0.2 1 23 100 122 100 122 0.98 4 13 2.8e-06 0.00021 22.1 1.9 1 23 128 150 128 150 0.97 5 13 0.003 0.22 12.6 0.7 2 23 158 180 157 180 0.96 6 13 1.8 1.3e+02 3.8 0.5 3 23 188 209 186 209 0.94 7 13 0.0023 0.17 13.0 2.3 1 23 215 237 215 237 0.99 8 13 0.00066 0.049 14.7 3.9 1 23 250 274 250 274 0.94 9 13 0.00061 0.045 14.8 2.8 2 23 287 308 286 308 0.96 10 13 1.6e-06 0.00012 22.9 0.9 1 23 314 336 314 336 0.98 11 13 4.8 3.5e+02 2.5 0.8 6 23 345 362 343 362 0.83 12 13 2.6e-06 0.00019 22.2 1.7 1 23 367 390 367 390 0.98 13 13 3.5e-05 0.0026 18.7 0.6 1 23 396 419 396 419 0.96
Sequence Information
- Coding Sequence
- ATGTCTAATTCGTTTGACTCGGGAACGCTTCGCATCGGGATGAAAAACGAAACGAAGACCACCAAACCGAAACCCACTGACCCTTCAATAGTGGCAGTAGGACCCGATTTGTCCAAATCGTTCGATTGCAAGGAATGCGGCAAGCCGTTCAAAAAGCTAAACTCTATCAAGGCGCACATGAGAACCGTGCACTCAAAAACACCTCGCACCATGCAAAAATGCCACTTTTGCGATGAGGAGTTTCCCAGCTACAGACTCCGCTCGAAGCACAGCGTCACACACTTCGCCGACAGTAAGTTCGAGTGTCAAGTGTGCGGGAAAACGTACACGACCCTCGTCGGTCTGGAAACACACATGAACGAGCACACAAAACGAAAAATATTCATATGCGACTATTGCAACAAGGAGTTTGTGCACAAGAACTCGCTCTTGAAACACATCCAAATCCACATGGGCACCAGAGTGAGACTGGTGTGCGACCTGTGCGGCGTGCAGTGCAACGACAGCACCCAGCTCAGGCTGCACACGAGCACCGTCCACGAAAAACTGAGGCCGTTCGGCTGCCAGGAGTGCGACCTGTGGTACGCGACCAAACGCCGTCTTAAGTACCACGTGATGCAAAAGCACACGGGCGAAATGCCGTACAAGTGCGAAGTGTGCGCCAAACACTTCCCGGCGATGGAACACCTGAGAGGCCACCAGAAATCGCACAGCATGAGCGCCGGCGCACAGACAGCGAAGAAAGTCTACACCTGCCCCCACTGCGAAACCAAGTTCGAGTCGAAGTCGAGATATCTGTCGCACCGGCGCACGTTCGTGCACTTGCATCTGAACAAGAAAATACTCGAGAAAAACCTCAGGTGCGAGTACTGCGACAGGATATTCGAGAACAAGTACTCGCACAACAGACATATGAACCTGCATCTGGGCATCAAGAATTACTCGTGCCAATACTGCGACAAAAAGTTCATCGATAAAGGCAGCGTCGCCCGCCACATTAAGCGGCACGAGGCCCCCGCAGACAAGCAGACCTGCACAGTGTGCCTGAGGAAAGTGAGGAACATAGAGAAGCATATGAAAGGGCACGTGGAGAAACCGTACGAGTGTCAGTATTGCAATAAAAGTTATCCGGAAAACAACACGTTGACCCGACACATAAAGACGAAGCATTTGAATATAAGGCCGCACGTGTGTCCGCTGTGCCCGGCGAAGTTCGTCCGACCGGACGCGCTGAAGCGGCACAATAAGAGGAAGCACAACGGCGTCGAAGTGAAACCGCCGCCGATTGAGGTGGACTTGGGACAAATACAAACGTTCAAAATCGAAAAGGTTTAG
- Protein Sequence
- MSNSFDSGTLRIGMKNETKTTKPKPTDPSIVAVGPDLSKSFDCKECGKPFKKLNSIKAHMRTVHSKTPRTMQKCHFCDEEFPSYRLRSKHSVTHFADSKFECQVCGKTYTTLVGLETHMNEHTKRKIFICDYCNKEFVHKNSLLKHIQIHMGTRVRLVCDLCGVQCNDSTQLRLHTSTVHEKLRPFGCQECDLWYATKRRLKYHVMQKHTGEMPYKCEVCAKHFPAMEHLRGHQKSHSMSAGAQTAKKVYTCPHCETKFESKSRYLSHRRTFVHLHLNKKILEKNLRCEYCDRIFENKYSHNRHMNLHLGIKNYSCQYCDKKFIDKGSVARHIKRHEAPADKQTCTVCLRKVRNIEKHMKGHVEKPYECQYCNKSYPENNTLTRHIKTKHLNIRPHVCPLCPAKFVRPDALKRHNKRKHNGVEVKPPPIEVDLGQIQTFKIEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01569552;
- 90% Identity
- iTF_01569552;
- 80% Identity
- -