Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.7e-05 0.062 13.9 0.2 10 38 191 216 188 221 0.89

2 5 0.36 6e+02 1.1 0.2 18 28 230 240 223 255 0.81

3 5 0.0087 14 6.3 0.1 18 28 256 266 248 275 0.89

4 5 0.00067 1.1 9.9 0.2 15 41 281 304 272 306 0.85

5 5 0.035 59 4.3 1.8 14 29 308 323 304 335 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.7e-05	0.062	13.9	0.2	10	38	191	216	188	221	0.89
2	5	0.36	6e+02	1.1	0.2	18	28	230	240	223	255	0.81
3	5	0.0087	14	6.3	0.1	18	28	256	266	248	275	0.89
4	5	0.00067	1.1	9.9	0.2	15	41	281	304	272	306	0.85
5	5	0.035	59	4.3	1.8	14	29	308	323	304	335	0.76

Coding Sequence: ATGCCGCGCTGCTACATGGTGAAGAAAGGTGGTCACGCGCAGAGGCACGGCGGCGCGCCCCCGTTCAGCCCCACCGAAGCCAGCGTCGCCCCCTCCTGCTATAACCCAGAGGAACATTCCGCAGTTACAGGACCTGACTACGTAGAGTTGGGAAGCAGTCCGCTTTCTGAGCGTTCAGCCGCCGACACCGAGGCGGCGCACGAGTTGCTATCGCTCGCGCAGAGCGTGCCTCCCCTCCCCCCGCTGCCGTCGCTCCCCCCACTGCCACCTGGTACGGTCTATACTGTACTGCCTACTTGCCCCACGCCGATAGTGCCGCTCTACACGTACACCATTCAGCCCACAAACATATACATACTCACCGAGCAGCCCCAAGAACCTGTCTACCATAGCATACAAACCGTAGAATATACCAGTGCCCCGCAACCGGTAAGCTACGTTTCTTATCAGTCCTTCGAAACAGCGGAGAACACTGAGCCACCGACCGATGAAAAGGAGCCTGAGCCGGAGTCACTACCGACCGTCACGCCCGAGAAAACTTCTTCGACATCGACGTCCCCACCACCACCGTCGCCGAAGGAAAAAACGAAATACGACTGCAACGAATGCGGCAAGCGGTACGCGACGTCGTCGAACCTATCGCGGCACAAGCAGACGCACCGCAGTATCGACTCGGGGTGCGCGAAGCGGTGCGGCGAATGCGGCAAGGCGTACGTGTCGATGCCGGCGCTCGCGATGCACGTGCTCACGCACCGCATGGGACACGTGTGCGGCGTGTGCGGCAAGCAGTTCTCGCGGCCGTGGCTGCTGCGCGGCCACCTGCGGCTGCACACCGGTGAGAAGCCGTACACGTGCACGGACTGCGGAAAGACGTTCGCCGACCGCTCCAATCTACGGGCGCATCTCCAAACACACTCCGCCGATAAGAAGTACCACTGTGACTTCTGCAACAAAACCTTCGCCCTGAAAAGCTACTTGAACAAGCATCAGGAGACTGCGTGTACTGTGCGTTCCGATGAAAAATAA
Protein Sequence: MPRCYMVKKGGHAQRHGGAPPFSPTEASVAPSCYNPEEHSAVTGPDYVELGSSPLSERSAADTEAAHELLSLAQSVPPLPPLPSLPPLPPGTVYTVLPTCPTPIVPLYTYTIQPTNIYILTEQPQEPVYHSIQTVEYTSAPQPVSYVSYQSFETAENTEPPTDEKEPEPESLPTVTPEKTSSTSTSPPPPSPKEKTKYDCNECGKRYATSSNLSRHKQTHRSIDSGCAKRCGECGKAYVSMPALAMHVLTHRMGHVCGVCGKQFSRPWLLRGHLRLHTGEKPYTCTDCGKTFADRSNLRAHLQTHSADKKYHCDFCNKTFALKSYLNKHQETACTVRSDEK

Sequence clustering based on sequence similarity using MMseqs2