Zmor016285.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000007.1:35033498-35038457[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.7 3.4e+02 3.2 0.8 5 23 69 87 58 92 0.63 2 15 0.52 31 6.4 0.9 1 20 103 122 103 123 0.94 3 15 0.028 1.7 10.4 3.2 1 23 144 167 144 167 0.94 4 15 0.0059 0.35 12.6 3.7 1 23 171 193 171 193 0.98 5 15 0.78 47 5.9 2.2 1 23 228 251 228 251 0.98 6 15 0.048 2.9 9.7 2.3 1 21 273 293 273 296 0.90 7 15 0.0027 0.16 13.6 1.0 1 23 412 434 412 434 0.96 8 15 0.47 28 6.6 3.0 1 23 469 491 469 491 0.96 9 15 0.098 5.9 8.7 1.4 2 23 497 519 496 519 0.95 10 15 0.002 0.12 14.0 2.4 1 23 526 549 526 549 0.97 11 15 0.27 16 7.3 4.1 1 23 570 592 570 592 0.97 12 15 0.00022 0.013 17.0 5.8 1 23 597 620 597 620 0.96 13 15 0.48 29 6.5 3.9 2 23 630 652 629 652 0.93 14 15 0.068 4.1 9.2 0.2 2 23 658 680 657 680 0.96 15 15 0.12 7.2 8.4 1.7 2 20 690 708 689 711 0.91
Sequence Information
- Coding Sequence
- ATGATAATCACAGAAGAATTTGACTTAGACTCAAAAAAATCAATCACAGAAGAATTTGACATAGACTCAAAAAAATCAATCACTGAAGAACTCGATCTAGACTCAAAAAAACCACTCACCGAAGAACTTGACTTAGACTTTAAAAAACCCCTCTTACACAACCACGAAATATTTAAATGCGCAGAGATTGAACCCGAGCTATATGAATGTCAAAGTTGTACCAACTTCCAAACTAATTTTCTGGTCCATTTGCAACAACACATCAGAGCAAATCATGCGCTGCAAAACCCAGACCCGTTCGAAATATACCAGTGCGGAAACTGCGACTTTACAACATACTCGAAATATTTGACAATCCGACACAAACTCTTCATTCAATGCGCCCCAAAAAGCGACTGCGACACTCACGATTTACAGAAAAACAACTTCTTCCACTGCGACTTTTGTTCATACAAAGTTAGACGCAAAGAGTCGTTGCTGCGACACTTGGAAAACAACCACAATGAGTGGTACCGGTGCGACAAGTGCACTTTTGTTACAAAGCGGAAGCTATTGCTTAAAAAACACAAAAAAGTGCACGTACCGAAATGGTTAGAGTGTGACCAGTGCACCTACTTCGCGATGAAGAAAAAGAGCATAAGACAGCATAAAATTATGAAGCATGGTGTGCGTGCGACATGGTACCAGTGCGGACGTTGTCCCTACAAGTCGGTTTTTTTGATGCGGCTGCAACAACACCACAGGAGTTGGCACCGGTATTCGCAGTTGCAGTACAATATTGTGGAGATGGGGGTTAATTCGAAAAGCGTTGAGTGGTTCCGGTGCGGGCAGTGCCCGTTTAGGACTAGGACTCATGGGGATTTGCGAAGGCACAATCTGGATAAGCATGGGTTTCTTAACGTTCATGAGTTATTTGACTGCAGAAAGCGCATTGTAGATCACTATACGTGTGCGAAATGTGATAATTTTCAAAGTGACTTATGTACACACTTAAAGAAACATGTGAGGGAGGGGCATGTCGTCCAGGACCCTGAAGAATATACTGTGTACAAATGCCATAGGTGCCGCTTTACGACGTATTCTAAGTATTTAGATTTAAGACATGGTTTGTTTGATGACTGTGTTTCAGCGGATGAAGATGAGTTTGCGCAAACAGAAGAAGAAATAGAAATTCGTCCGCCTAAAAGACAGTCGGATAAAAATCTGGAAGAAGCAGACAGAGTCGAATTGTGGTTCAGTTGTAAAATATGCCCATTCAAAAGCACTAAAGAAGGCAATTTGAGCAAACACATGGTATACCACGGCAAAAAATTTTTCCATTGCAAATACTGTAAGTTCAAATCCCTACTCAAATCCGATTTACAAACGCATCTGGTACAGCACATAAACGAAGATTTGACGTACTTTCAATGTGCGCATTGCCCCTTTAAGACCTTATTTAAAGGCAACTTGTCAAAGCACGTCCAAAAGCACTCCTCTACTTGGGTGAAATGCGACCAATGCCAATTTAAAACCAAGTCCACTTATAACCTCTCACTCCACGAAAGACTCATGCATGGAGTCCGCTTCAAGTGGTTTTACTGCGACCTGTGTGACTTCCAAACCAAACGCTTATATAACCTAAAACTCCACCAAAAGGTGAAGCACGTGACTGTTGAGGAAAAAAAAACGGGTGCTCCAAACCAAACGAGCGATGAATCCGGGTGGTTCCATTGCGATCAGTGCACTTTTAAGACCAAATTGAAGCCTAGTTTGAAGACGCATCAGCAGGTTCACAGCGAAAATAAGTACAAGTGTAAATATTGCGACCATACTTCTAAGCGGAGGTACAACTTGAAGACTCACATTTTGCAAAAGCATGCAGATCCGAATAATATCGAGTGGTTGTGTTGTCAGCAGTGCGATTTTAAGTCGAAGACGAAATCTATTTTGAAGAGGCATATTCAGGAGAGGCACTCGAACGAGTGGGTTTATTGTGCGCAGTGTCCCTTCAAGGCGAAGAGCAAGAGACTTTTGATCAGTCATCTCCGAGTCGTGCATGACTGTGGGAAAAAGTTTAATATGTTGCAATGTGAGCATTGTCCGTACGTGTCGAGGAATGCTTCTACTATGTGGCACCATAAGTGGAAACATCGGCAGTTGATGATGGAGAAAGGAGAAGGGAAGGAGTAG
- Protein Sequence
- MIITEEFDLDSKKSITEEFDIDSKKSITEELDLDSKKPLTEELDLDFKKPLLHNHEIFKCAEIEPELYECQSCTNFQTNFLVHLQQHIRANHALQNPDPFEIYQCGNCDFTTYSKYLTIRHKLFIQCAPKSDCDTHDLQKNNFFHCDFCSYKVRRKESLLRHLENNHNEWYRCDKCTFVTKRKLLLKKHKKVHVPKWLECDQCTYFAMKKKSIRQHKIMKHGVRATWYQCGRCPYKSVFLMRLQQHHRSWHRYSQLQYNIVEMGVNSKSVEWFRCGQCPFRTRTHGDLRRHNLDKHGFLNVHELFDCRKRIVDHYTCAKCDNFQSDLCTHLKKHVREGHVVQDPEEYTVYKCHRCRFTTYSKYLDLRHGLFDDCVSADEDEFAQTEEEIEIRPPKRQSDKNLEEADRVELWFSCKICPFKSTKEGNLSKHMVYHGKKFFHCKYCKFKSLLKSDLQTHLVQHINEDLTYFQCAHCPFKTLFKGNLSKHVQKHSSTWVKCDQCQFKTKSTYNLSLHERLMHGVRFKWFYCDLCDFQTKRLYNLKLHQKVKHVTVEEKKTGAPNQTSDESGWFHCDQCTFKTKLKPSLKTHQQVHSENKYKCKYCDHTSKRRYNLKTHILQKHADPNNIEWLCCQQCDFKSKTKSILKRHIQERHSNEWVYCAQCPFKAKSKRLLISHLRVVHDCGKKFNMLQCEHCPYVSRNASTMWHHKWKHRQLMMEKGEGKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -