Zmor013741.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000007.1:5992451-5994292[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.073 4.4 9.1 0.7 2 23 63 85 62 85 0.96 2 15 0.16 9.5 8.1 2.9 1 23 100 122 100 122 0.98 3 15 0.34 20 7.0 2.7 1 23 172 195 172 195 0.94 4 15 0.038 2.3 10.0 3.4 2 23 205 227 204 227 0.93 5 15 0.21 13 7.7 6.7 2 23 235 257 234 257 0.97 6 15 4.7 2.8e+02 3.4 3.1 1 23 266 288 266 288 0.95 7 15 2.7 1.6e+02 4.2 2.2 1 23 297 319 297 319 0.96 8 15 0.019 1.2 10.9 0.6 2 23 329 351 328 351 0.94 9 15 2.3 1.4e+02 4.4 0.6 3 23 361 382 359 382 0.92 10 15 2 1.2e+02 4.6 2.4 1 23 391 414 391 414 0.95 11 15 0.0072 0.43 12.3 1.1 3 23 423 444 421 444 0.96 12 15 0.052 3.1 9.6 4.3 1 23 453 476 453 476 0.96 13 15 0.0011 0.069 14.8 2.9 1 23 485 508 485 508 0.96 14 15 0.0037 0.22 13.2 3.6 1 23 517 540 517 540 0.93 15 15 0.004 0.24 13.1 0.9 1 23 549 572 549 572 0.96
Sequence Information
- Coding Sequence
- ATGAAAATACCGACAAAAACTAAGCCTCGTCACGATACGAAGGTACCCCCAAGCTGTCATAACCTCACTTTTGCGTTTAACAATTTGCAAATTGTAGACGATTCTAATCGACTAAGAATGGCCCACGAGCGCTACTCTCCACCCGAAATCAAAATCGCTCAAATCAGCCTCTGGGATAGCCTCCAGCGATGCAATCAGTGCCAGTTCATGGCCGACACAAAAGTCAGTCTTGAAGATCACATTCAAAAGTTCCACCCGAAAGTGTGGTTCAGTTGCGCCCTGTCAACACTTGAACTGTACAAATGCAGTAAATGCGGCTTTGAAACAAGTGTAGTCGTCGATTTTCATAAACACAGGCAGCAACATAGCACTGGAGGAAAGTTAGATGGTTGTTTACAAGACCATCAGAGTTACAACTGTCGCAATTGCCATTTTCAAACGTATTCTCAGTTGGTGTTTTTAAAACACGCGTACTGGGCTTGTCGTACCATTAAAAACAGGAAGTGGGGAAGATTCAAGTGTTCTCGGTGTAGTTTTATTACAATTAGTAGAAAGTCGCTACGATGGCACAAACTGTATAAACATACAGTTCTCAGAAACGTGGAGTGGGTGCAGTGTAACGAGTGCAACTACAGAACTAAGTTTAAACACCTTTTGATTAAACACAAAATTAATAAACATAGGGTTAAAAGTGATGTGCTAAAGTGTGATTATTGTATGTTTAAAACGTCACACTATTATGACTTGTGTAAACATATACGGACTAAACATTTACCAGCCTTGTCAACTACTTTGTATCAGTGTAGATACTGCATGTTCCAGACTAAATGGAAGTCCTATTTGAAAAAACACGTTCTGTCACATCAAATTCCTAAAAATATCAAATGGTTTGAATGTGCACAGTGCATGTTTAAGACTCGTTACGAAGGTTATTTCAAGCGCCACCTCCAGAACCACGGCGCCGACGTAGAAATCACCTGGTTAAAATGTGAGCAGTGTTCCTACCAAGCTAACCACCCCACGAGTTTACAAAGACACATCCTTGAAGGTCACCGTCCCGAAAACATCGAGTGGTTAGACTGTGACCAGTGCTCCTACCGAGCTAAGTGGAAATTCCTCCTTAAAAAACACATCCTAGTAAAACACACCGCCTACGAAGACATCCAGTGGTACTTCTGCGACAAGTGCCCCTTCAAAACTAAATGGAAACCCAACCTCACCACCCACTCCCAAAAAAAACACACCAACCCTGAAGATTTCATCGCCTGTCAACAATGTCCGTTCAAAACCATCTCCAAACACATGTTAAACCGCCACATCCAAAGCGAACACACCCCCATCGAAGACATGAAGTACTTCAAGTGCGACCATTGCACGTACAAGGCGAAATTTAGGGCCTATTTGAAAAAGCACGTGCAGAATATGCACACAGCTCCGGAGGATATCAACTGGTTTTGTTGCGAAGAGTGCGACTATAAGACGAAGCGCAAACCGGATTTGAATAATCACGTGCGGTTGAAGCATTCAGAGGTGTCTAGGGTCACTCTGTTCAAGTGTGAGCAGTGTCGGTATATTACTAAGCGGAAGTACCATTTGCAGAATCACGTTTTGGCTAAACATACTGAGTCTAAAGATGTTAAGTGGTTTCAGTGCGAGTTTTGCCCCTATAGGGCTAAGTTTAGCGTTAACTTGAAGAGGCACGTGGAGAGTAACCATAGTACTCCGGAGGATGTTAAATGGTTGAGGTGTGAGCGGTGCTCGTACAAAACTAGGTGGAAAAGGTGCTTGAAGATACATTTGGCGAACCACGAAATGAGAAATGAGGTGGATGTAGATGTTTGA
- Protein Sequence
- MKIPTKTKPRHDTKVPPSCHNLTFAFNNLQIVDDSNRLRMAHERYSPPEIKIAQISLWDSLQRCNQCQFMADTKVSLEDHIQKFHPKVWFSCALSTLELYKCSKCGFETSVVVDFHKHRQQHSTGGKLDGCLQDHQSYNCRNCHFQTYSQLVFLKHAYWACRTIKNRKWGRFKCSRCSFITISRKSLRWHKLYKHTVLRNVEWVQCNECNYRTKFKHLLIKHKINKHRVKSDVLKCDYCMFKTSHYYDLCKHIRTKHLPALSTTLYQCRYCMFQTKWKSYLKKHVLSHQIPKNIKWFECAQCMFKTRYEGYFKRHLQNHGADVEITWLKCEQCSYQANHPTSLQRHILEGHRPENIEWLDCDQCSYRAKWKFLLKKHILVKHTAYEDIQWYFCDKCPFKTKWKPNLTTHSQKKHTNPEDFIACQQCPFKTISKHMLNRHIQSEHTPIEDMKYFKCDHCTYKAKFRAYLKKHVQNMHTAPEDINWFCCEECDYKTKRKPDLNNHVRLKHSEVSRVTLFKCEQCRYITKRKYHLQNHVLAKHTESKDVKWFQCEFCPYRAKFSVNLKRHVESNHSTPEDVKWLRCERCSYKTRWKRCLKIHLANHEMRNEVDVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -