Zmor012963.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000007.1:792570-796367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 1.2e+02 4.6 2.0 1 23 21 43 21 43 0.96 2 17 0.037 2.2 10.0 4.1 1 23 60 82 60 83 0.95 3 17 0.21 12 7.7 1.0 1 23 165 188 165 188 0.95 4 17 3.7 2.2e+02 3.8 1.5 2 23 197 219 196 219 0.90 5 17 0.31 19 7.1 4.1 1 23 228 251 228 251 0.94 6 17 0.3 18 7.2 0.9 1 23 267 290 267 290 0.94 7 17 0.1 6 8.7 3.6 1 23 298 321 298 321 0.93 8 17 0.52 31 6.4 1.1 3 20 397 414 395 415 0.93 9 17 0.00039 0.024 16.3 1.6 1 23 427 449 427 449 0.98 10 17 0.15 8.9 8.1 1.9 1 23 479 502 479 502 0.95 11 17 0.44 27 6.6 2.1 2 23 511 532 510 532 0.96 12 17 0.00014 0.0085 17.7 1.3 1 23 564 587 564 587 0.97 13 17 0.05 3 9.6 5.5 1 23 628 650 628 651 0.96 14 17 0.16 9.7 8.0 0.1 1 23 670 693 670 693 0.96 15 17 0.19 11 7.8 1.1 2 23 696 718 695 718 0.95 16 17 0.24 14 7.5 0.1 2 23 731 753 730 753 0.91 17 17 0.37 22 6.9 0.3 1 19 762 780 762 782 0.96
Sequence Information
- Coding Sequence
- ATGGCACTCTTCGAGTACTCGGACAAGTTCTTCCAAATCAACACTTCCAACAAGAACGTGCACTACTGCAAAATCTGCCCCTACTTCTCCACGTCGATCCTGTTCATGATAAACCACGTCAGACGTCACCGAGCCCCCAAGAAACTCTTCGACTGTCCATCCAACACCATCGAGACCTACTTCTGCAAGGACTGCGGCTTCCGCACTAGTCTGACCGTGCTGTTCAAGAAGCACATCCGGCAGCACCACCACAGTCAGAGCAGCCCCCCGAACGGACACTCTCAGGTCCGCCGCTACATCTGTGCCGAGTGCAACTTCATCACTTACTTTTCGCTGACGCTGATGCAGCATGTGGTGAAAAAGTGCCTCAAAGATAAGGTGGCGATTTTTCCGGCGCCGGAAAAGTGCACTGTACCGGAACCAACAAGTGTGAGACTAAATGGGATCAGGAAAAGTCGCAGGACAAGCACTAATTGGTCGAAGGGGGCGCAGTTTAAGTGTGGCCAGTGTCCGTATAAAGCCAGGAGGGAGTGTCTTCTGGCTGCACATAAAATGAACGAGCATTTGGCGAGGACCGACAAGTGGAAGCAGTGTGATGAATGTCCATTCAAAGCCCGGAAGTTCAGTCGCTTGAAGAACCATAAAATAGCGAAACACTTGAAGGAGAGCGAAATCGAATGGTTCTTGTGTGGGTACTGTTCATACAAAGGGAAATTCAAACACTCGCTGAAGCGTCACGTGTTGAGGCGACACCCCTCCAAGAAATATTTCGAAGGCAACAAAAGTAGTCCTGCTGTATTTAAATGCGACAAATGCCCGAACCAATTCCAGTGGAAGAAAAATCTACAATTACATGTGATGGCAAAACATGGTACTACCAATTCCAAGTGGTACAAATGTGATCAATGTACCTTTAAAACCAATCATTCTTGGAATTTAGCCCAACACCAAGTACACGTACACCGAGAAGTTAGTTCGGACGACTGGCGGCAGTGTAAGTTTTGTATTTACAAAACCAAATTTAGACAAAACTTGTCACGTCACGTTTTGCAAAAGCATCCAAAAGGGGCGCAGTTAATTAATAAAAAGAGCAAAGTAGAAATTCGTCCGAAAGCATCAAGTCCGGTCAAACCGAAAGAGGAAAATTCAATCGCAACGCCTAGTACCGAAGATACTAAATGGCACTTGTGTGACCTCTGTTCATACAAAACTAAATACGTCGGAAATTTAAATAAACACCAATCATGTAAACACTTCAAGAACGACAAAACCGATTGTTTCCCGTGCTCGTTGTGTCCATACAAGGCGAAATTTAGATATAACTTGACCACTCACATGAAAACCCACTCACAAACATCACAATCAAACACGACTTCTAATAAAGTGAAGGCGGAGAATTTAATCGTGACGCGTAGTAATGGAGATAGTAAGTGGCACGAGTGTGACCAGTGTGGCTACAAAGCCAAACTATATTCGGATTTACGCGAGCACAAATCGCGCCAACACGTAACAGTCAAAGGGGAATGGTTGAATTGTAAACTGTGTCCATACAAATCAAAATTGAGACGAAGCTTCTGGAGTCACTTGAAAAAACACAGAAAACCAGAATTGCAGGAACCCCCAACTACAATAATCAAAAGCGAAGAAGACTTAACCCCCATGCCCAAACTAAGCAAACCGTCGAAACTCTACGAGTGCGAAAAGTGTTCCTATAGATTCCCCGGTAAGGTGAGTTTGAAGCGCCACATGACCTCGAAACACACCAACGAAAAAAAATTCACCTGGTTTAACTGCGACCAGTGCCCTTACAAAACCAAATTTATCAAAGACCTCCACTTCCACAAAATCTGTCAACACTTAAAAGACGACGAGATCGACTGGTTTCAATGTAAATACTGCGAGTATAAAACTAAACTGGAGAAATTATTGCGCAGACACACTCTAAAGCACCACCCGACAAAAGCGGTGGAATATATGAAGCAACGTCAGAAGGATTGCGCCAAAACGTATCCCTGTGATCAGTGTCCAGCGATATTCCAAGGCGAGATAAGTTTCAAGCGACACGTGGACACCAAACACGTGTTAAAGTGCGAGTTTTGCGCCTACAAAACTAACCTTAACTCGTTGTTAAAAAGGCACGTGCTTAAAAATCATAAAGTGAAGGTTTCCAGTAATGATGCGAAGGGTCTGAGTTGCAGTGAGTGTTTGGTGGTGTTTAAGACATCGGCGATTTTGAAGAGACACGTGATTGAGCAGCATACGGATGAGAAGGATATCGTGTGGTTTGAATGCGACAGCTGTCCGTATAGGTCGAAGAGGCGCGGGGGGTTGTTTGCGCATAGCTATAATGTGCGACGAAATTCCGGACGATGGGACGGACGTTCTCCGGTGACGGTCCGGAATCTCGCCGATAACGTATGGGGTGGCGGCGTACTTGGGTGCCAAGCTTTGGGTCGACTAGTATCGCTGATGTCAGTAACACGTCTGGTCGACCAAGCTTATGCGGCTACCTTCACGCCGCCGGGGGTGGCGCCTTCGGTCAGGAGCGGCGGTCGCTCGGGCGCCAGCTCCCTCTCCGGGGGAGGGAGCGCCGGGGTGCTCTAA
- Protein Sequence
- MALFEYSDKFFQINTSNKNVHYCKICPYFSTSILFMINHVRRHRAPKKLFDCPSNTIETYFCKDCGFRTSLTVLFKKHIRQHHHSQSSPPNGHSQVRRYICAECNFITYFSLTLMQHVVKKCLKDKVAIFPAPEKCTVPEPTSVRLNGIRKSRRTSTNWSKGAQFKCGQCPYKARRECLLAAHKMNEHLARTDKWKQCDECPFKARKFSRLKNHKIAKHLKESEIEWFLCGYCSYKGKFKHSLKRHVLRRHPSKKYFEGNKSSPAVFKCDKCPNQFQWKKNLQLHVMAKHGTTNSKWYKCDQCTFKTNHSWNLAQHQVHVHREVSSDDWRQCKFCIYKTKFRQNLSRHVLQKHPKGAQLINKKSKVEIRPKASSPVKPKEENSIATPSTEDTKWHLCDLCSYKTKYVGNLNKHQSCKHFKNDKTDCFPCSLCPYKAKFRYNLTTHMKTHSQTSQSNTTSNKVKAENLIVTRSNGDSKWHECDQCGYKAKLYSDLREHKSRQHVTVKGEWLNCKLCPYKSKLRRSFWSHLKKHRKPELQEPPTTIIKSEEDLTPMPKLSKPSKLYECEKCSYRFPGKVSLKRHMTSKHTNEKKFTWFNCDQCPYKTKFIKDLHFHKICQHLKDDEIDWFQCKYCEYKTKLEKLLRRHTLKHHPTKAVEYMKQRQKDCAKTYPCDQCPAIFQGEISFKRHVDTKHVLKCEFCAYKTNLNSLLKRHVLKNHKVKVSSNDAKGLSCSECLVVFKTSAILKRHVIEQHTDEKDIVWFECDSCPYRSKRRGGLFAHSYNVRRNSGRWDGRSPVTVRNLADNVWGGGVLGCQALGRLVSLMSVTRLVDQAYAATFTPPGVAPSVRSGGRSGASSLSGGGSAGVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -