Zmor038387.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000005.1:670895-672553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2 1.2e+02 4.6 1.6 1 23 21 43 21 43 0.96 2 16 1.7 1e+02 4.8 1.5 1 23 59 82 59 82 0.95 3 16 9.8 5.9e+02 2.4 0.3 1 10 94 103 94 114 0.78 4 16 1.2 73 5.3 6.4 1 23 152 175 152 175 0.95 5 16 0.0034 0.2 13.3 1.3 1 23 184 207 184 207 0.97 6 16 0.0014 0.086 14.5 1.6 1 23 216 239 216 239 0.95 7 16 0.016 0.95 11.2 0.8 1 23 248 271 248 271 0.95 8 16 0.029 1.7 10.4 2.1 1 23 280 303 280 303 0.92 9 16 0.55 33 6.4 1.4 1 23 312 335 312 335 0.96 10 16 0.014 0.81 11.4 2.4 1 23 344 367 344 367 0.95 11 16 0.039 2.3 10.0 2.7 1 23 377 400 377 400 0.96 12 16 0.036 2.1 10.1 3.3 1 23 409 432 409 432 0.93 13 16 0.15 9.1 8.1 3.4 1 23 439 462 439 462 0.96 14 16 0.0022 0.13 13.9 2.5 1 23 468 490 468 491 0.95 15 16 0.063 3.8 9.3 4.0 1 21 497 517 497 519 0.95 16 16 0.43 26 6.7 0.8 1 23 529 551 529 551 0.97
Sequence Information
- Coding Sequence
- ATGTCAACTTTGAAATATGAAACATTCACAAGAAGTACGAACTTTTCATGGAAAAATGTGCACAACTGCGAACTCTGTCCATATTTTACAACTTCGGTCCTCTTCATGGCGAACCACTTGAGACGACACCGTTCAACACTGGAAAAATTCGCTTGTACAGACGAAATTGAACCGTATTGTTGCAAAGTCTGCGACTTTAAAACAGAAGTAGTGATTGTTTTGAAACAACACATTAATAAACAACACAGAGACGATTTATCAAGCTTCAGTATACAGAACTACGTTTGCAAAAAATGCGACTTTGAGACAAATTTCTTGCTGAAGTGGCTTCAACATACTTCAGAATGCACGGGGAAGCACCTAAGTGTGAGCTCCGACTTCAAGCTAATTGGCAAAACTGAGTTCAAAAATAGTTTAAAACTTCATATAGAAAGTCCCCACTTAAAAAAACGACACGCATGCCACAAGTGTCCGTATCGAAGTAAATGTAAAAAGAGTTTAAAAATCCACATAAAGGTGGTCCACTTAGACTATCAAGATTGTGAATGGTACGAGTGCGAAAAATGCCCTTTCAAAACTAGAATAAAAAGTTATTTAAGAAACCACGTAAATCGCTTGCATTTGAACGACGAAGATGTTAAATGGCACGAATGCAGCGAGTGTCCATTCAGAACTAAGTACAAAAGTTATTTGAAAATTCACATAGCTGTGAAACATCTAGATGAAGACAAAATTAATTGGTACGAATGTGATAAGTGCCCATTCAAGACCAAATCAGAAATTAAATTAAAAAACCACATATACAACGTACATCTGAACGAAGAAGATGTTAAGTGGTACGAATGCGAACAGTGTCCATTTAAAACCAGATATAAAAGAAATTTCAGCAGACACGTAACTGCGAAACACCAAGACGAAGAAAAAATTAAGTGGTACGAATGCGAAAAGTGCCCATTCAAGACCAAATTACAACCTATATTAAAAAGACACATTCACAGCTTACATCTGAACGAAGAAGATGTTAAATGGTACGAATGCAACGACTGTGCGTTCAGAACTAGGTACAAACGAAATTTTACCAGACACGTGACTATAAAACATCTACTAGACGATGAAAAAATTAAGTGGTACGAATGCGAAAAGTGCCCATTCAAAACTAAATTAGAATCGAAATTAAAAAACCACATACATAACTCACATCTTAGCGAAGAAGATGTTAATTGCTACGAATGCAAAGATTGTAAATTTAAAACCATGTATAAAAAAAATTTCGAAAGGCATTTAACTGCTAAACATCTGGAAAAAATTGAGTGGTACGAATGTCGCAATTGTCCATTCAAAACCAAACTGGCGTCGAAATTAAGACATCATGTGAAATATCAGCATGTGGAGGTTAGATGGTACGAATGTGCCAGTTGTTCGTATAAAAGTACGAGGAAGGAGAATTTAAAAACGCATATAACTATTCACCATTCGGATGTTAAATCGTTTCAGTGCGAATTTTGTCCATTTAAGACGAAACTGAGTGGGAGTTTGAAGCGTCACATGAATTGCCACCGGTTGGATGGAACGAGTGTTAAATGGTATAAGTGTGATCAGTGCTCTTATAAAGCCAAGAGTGGGGCACCTTTGTATAAGCACAAAAAAATACATTTATAA
- Protein Sequence
- MSTLKYETFTRSTNFSWKNVHNCELCPYFTTSVLFMANHLRRHRSTLEKFACTDEIEPYCCKVCDFKTEVVIVLKQHINKQHRDDLSSFSIQNYVCKKCDFETNFLLKWLQHTSECTGKHLSVSSDFKLIGKTEFKNSLKLHIESPHLKKRHACHKCPYRSKCKKSLKIHIKVVHLDYQDCEWYECEKCPFKTRIKSYLRNHVNRLHLNDEDVKWHECSECPFRTKYKSYLKIHIAVKHLDEDKINWYECDKCPFKTKSEIKLKNHIYNVHLNEEDVKWYECEQCPFKTRYKRNFSRHVTAKHQDEEKIKWYECEKCPFKTKLQPILKRHIHSLHLNEEDVKWYECNDCAFRTRYKRNFTRHVTIKHLLDDEKIKWYECEKCPFKTKLESKLKNHIHNSHLSEEDVNCYECKDCKFKTMYKKNFERHLTAKHLEKIEWYECRNCPFKTKLASKLRHHVKYQHVEVRWYECASCSYKSTRKENLKTHITIHHSDVKSFQCEFCPFKTKLSGSLKRHMNCHRLDGTSVKWYKCDQCSYKAKSGAPLYKHKKIHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -