Zmor039526.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Zophobas morio
Gene Symbol
-
Assembly
GCA_027724725.1
Location
JALNTZ010000005.1:11876617-11883882[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.012 0.69 11.6 6.6 1 23 102 125 102 125 0.96
2 11 0.0075 0.45 12.2 0.2 1 23 130 153 130 153 0.97
3 11 1.4 84 5.1 4.8 1 23 186 209 186 209 0.97
4 11 8.8 5.3e+02 2.6 0.2 1 11 229 239 229 249 0.74
5 11 8.2 4.9e+02 2.7 5.2 1 23 283 306 283 306 0.94
6 11 0.00046 0.028 16.0 0.5 1 23 311 334 311 334 0.97
7 11 0.00017 0.01 17.4 3.2 1 23 343 366 343 366 0.97
8 11 0.027 1.6 10.5 5.8 1 23 375 398 375 398 0.97
9 11 0.0094 0.56 11.9 0.2 1 23 407 430 407 430 0.94
10 11 0.0067 0.4 12.4 1.2 1 23 439 461 439 461 0.98
11 11 0.0009 0.054 15.1 3.1 1 23 467 490 467 490 0.98

Sequence Information

Coding Sequence
ATGGAAGCTTATCATCACTGTAAAGACTGTGATTTTAAGACGGAACTGACAGTTGTGTTTGAACAACACATTAATCAACATCACGATCCTAAGAGAGAATCTAGTGAGGATATATCTAGTGAGGATTCCAGCAAAGAAAACTACGGTTGCGCAAAATACTACTTTGAGCCAAATCTGTCGTTGAAATCGTTTCAGAATTCTTCAGTATGCACGGAAACGAAAGAAAGTTCTCAAAGTGTGAGTTCTTTGGAAGAGAGTGCCACATGCAGTTCCGACTTCAAGCAAACTGAGGAAGTACATTGGTATTATTGCCACAAATGTACCTACAAATGTAAAGTCAAAAAAACTTTAACTCGTCACATTGATGTGCTACATTCGCACAGGTGGTATGCATGCGACAAGTGTCCATTTAAAACTAAATGGAAAGGAAATCTAACAGTCCACATAAATACAATCCACTTAGATGAATATGAAGGCAAATGTATGGCGAACCACGTGAGACGACACTGTTTCCCCTTGGAGACATTTACTTGTGACACCGCCAAAATTGAAGCTTTTTACTGTAAACACTGTGATTTTAAGACGGAACTAACAATTCTGTTTAAACAACACATTAAAAAACAACACGGCCGTAAGAGAGAATCTAGAAAGGATATATCTGGCCAGGATTTCTTGGTACAAAACTACGTTTGCAAACAATGCGACTTTGAAACAAGTCTGTCGTTGAAGTGGCTTCAGCATACTTCAGAATGCACGGGTACGAAAAAAAATCTTCAAAGTGTGAGTTCTTTGAAAGAGAGTGCCACATGGAGTTCCGACTTCAAGCAAACTGAGGAAACACATTGGCATCACTGCGCCGAATGTCCCTACAAAAATAAAATAAAAAGATATCTTAAACGCCACATTAAAAATAGGCATTCGAACAAACGGTATGCATGCGATAAGTGTCCGTTTAAAAGTAGACGTAAATGGGATTTAAAAATTCACATTAATAGAATTCACTTAGATGAACAAGATATTGAATGGTACAAGTGCCAAAAATGTCCATTCAAGACGAAAACAAAATCTAATTTAAGACTGCACACAAACAGCTTACACTTGAACGACGAAGACGTTAAGTGGTACAAATGCAAAAAGTGTAGTTTCAAAACTAAGCATGAAAGATACTTAAAGGTACACCTACGTGCGAAACATCCAGATGAAGAAAAAATTAAATGGTACGAATGTGAAATTTGCCCATTCAAAGCCAAATTGCCGTCGTACTTAAAAAAACATGTAATTTATCAACATTTGGATGAAAAAGAAGGTAAGTGGTACGAATGTACGACCTGTTCATATAAAAGTAGATTTGGGGCCAATTTAAGAAGGCATGTAAAGATCCATTTGAAGATCGAATCGTATCAGTGCGACTACTGTTCATATAAGACGAAATACAGTTATTATTTAATGAGTCATATAAATAGTCGTCATAAGAATAGAACAGATGTTAAGGAGTAA
Protein Sequence
MEAYHHCKDCDFKTELTVVFEQHINQHHDPKRESSEDISSEDSSKENYGCAKYYFEPNLSLKSFQNSSVCTETKESSQSVSSLEESATCSSDFKQTEEVHWYYCHKCTYKCKVKKTLTRHIDVLHSHRWYACDKCPFKTKWKGNLTVHINTIHLDEYEGKCMANHVRRHCFPLETFTCDTAKIEAFYCKHCDFKTELTILFKQHIKKQHGRKRESRKDISGQDFLVQNYVCKQCDFETSLSLKWLQHTSECTGTKKNLQSVSSLKESATWSSDFKQTEETHWHHCAECPYKNKIKRYLKRHIKNRHSNKRYACDKCPFKSRRKWDLKIHINRIHLDEQDIEWYKCQKCPFKTKTKSNLRLHTNSLHLNDEDVKWYKCKKCSFKTKHERYLKVHLRAKHPDEEKIKWYECEICPFKAKLPSYLKKHVIYQHLDEKEGKWYECTTCSYKSRFGANLRRHVKIHLKIESYQCDYCSYKTKYSYYLMSHINSRHKNRTDVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01568685;
90% Identity
-
80% Identity
-