Zmor026430.1
Basic Information
- Insect
- Zophobas morio
- Gene Symbol
- -
- Assembly
- GCA_027724725.1
- Location
- JALNTZ010000009.1:8101024-8102499[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.012 0.73 11.6 5.0 1 23 82 105 82 105 0.95 2 13 0.8 48 5.8 11.2 1 23 114 137 114 137 0.93 3 13 0.039 2.3 10.0 2.0 1 23 145 168 145 168 0.93 4 13 0.0015 0.093 14.4 1.5 1 23 177 200 177 200 0.96 5 13 0.00048 0.029 16.0 2.7 1 23 209 232 209 232 0.97 6 13 0.00084 0.05 15.2 1.9 2 23 242 264 241 264 0.90 7 13 0.00094 0.057 15.1 2.3 1 23 273 296 273 296 0.92 8 13 0.0034 0.21 13.3 0.7 1 23 304 326 304 326 0.97 9 13 0.0026 0.16 13.7 2.6 1 23 335 358 335 358 0.92 10 13 0.58 35 6.3 0.3 2 23 368 390 367 390 0.93 11 13 0.00059 0.035 15.7 0.8 1 23 399 422 399 422 0.92 12 13 0.072 4.3 9.1 2.6 1 23 431 454 431 454 0.92 13 13 0.00073 0.044 15.4 1.1 1 23 463 486 463 486 0.95
Sequence Information
- Coding Sequence
- ATGGACAATATTTTGTTTGATTGTGCCAACGACATCGAACCCTTCAAGTGCAAAAAGTGCCCAAATTTTCAAACCCACTGCCTACTATATCTCCAACAACACAGACGCCACCACCATAAAATAACAGAAGAAGACACCAAAAAGTGTGAAAAGTGTATTTTCGAAACTCACTCGAAATATTTATTGCTGCGACACAGTTTCTACGGCCACTGTGCTTCGTACAACGTAAATCAGTTTAACTGGTTCCGATGTGACTATTGCCCATCCAAATTCAAGATCAAAAGATACTTACAAAAACACATCCACTACCGTCACTCCAACCCCGACGAAATCCAGTGGCACCACTGTGACCACTGCACGTCAAAATTCAAGCACAAAAGCTACTTAAAAATCCACTTTAAAGCCAAACACCAGGATAAAACCCATCAGTGTTTCCATTGTGACCAATGCCCATCCAAATTCCAGTCAAAACCCGCATTACGCAAACACGTTTCACTAAAACACTCCCCCGAAGACGAAATCCGCCGATTCAAGTGCCCACACTGCGAATCCACGTTCAAATGGAACTCCGACTTGAAAAACCACGTGATAATAAAGCACTTACCCGAAGATAAAATTCAGTGGCATCAATGTGGCCAATGCCCGGCCAAATTCAAACAAAACTTCCTGCTCAAAACCCACGTGAGAAGTCGACATTTACCGGAAGCCAACATTCGTTGGCTCACCTGTGACCACTGCACCGCAAAATTCAAGCGAAACTTCGATCTCAAAAACCACATCGTCGCGCGACATTTACCCGACGATAAAATTCAGTGGTTCCAATGTGACCACTGCACGTCAAAATTCAAACGAAAATTCGCACTCAAAAACCACGTAGCGGCGATCCACAGCGACGGTGAAACTCAGTGGTTTCAGTGTAAAGAGTGTGACGCTAAATTCAAGTGGAAAACCAGCTTGAGAATCCACGCCGCTAAACATTTACCCAGCGATAATATTCACTGGTTTCAATGTGACCACTGCGCGTCTCGATTCAACCAGAAATACTTGTTACAGAGACACGTGACCGCTAGACATTCACCGAGCGACAATATTCAGTGGCTCGAATGCGCCCAGTGCGCGTCTAAATTCAAAGAGGAGAGGTATTTAAAACAGCACGTGAAACTGGTGCATTTATCGGGCGACGAAATTCAGTGGTTTCAGTGTGAGCAGTGCGCGTCCAGGTTTAAGCAGAAGTCGCTGCTGCGGAAGCACGTGGAAGCGCTGCACTTGCCGGAGGATGAAATTCGATGGTTTAAATGTGAGCAGTGCGCGGCGAAGTTCAAGCGGAAGTGTCGGTTGAGGGATCACGTGATCGCGAGACATTTGGGGGAGGGGGAAATCGAGTGGTTTGAGTGTTACGAGTGTGGGGGGAGGTTCAAACTGAAGAAGTTGTTGCAGAGGCATATTTTTGTAAAACATTTTGTGAATAGGGGATAA
- Protein Sequence
- MDNILFDCANDIEPFKCKKCPNFQTHCLLYLQQHRRHHHKITEEDTKKCEKCIFETHSKYLLLRHSFYGHCASYNVNQFNWFRCDYCPSKFKIKRYLQKHIHYRHSNPDEIQWHHCDHCTSKFKHKSYLKIHFKAKHQDKTHQCFHCDQCPSKFQSKPALRKHVSLKHSPEDEIRRFKCPHCESTFKWNSDLKNHVIIKHLPEDKIQWHQCGQCPAKFKQNFLLKTHVRSRHLPEANIRWLTCDHCTAKFKRNFDLKNHIVARHLPDDKIQWFQCDHCTSKFKRKFALKNHVAAIHSDGETQWFQCKECDAKFKWKTSLRIHAAKHLPSDNIHWFQCDHCASRFNQKYLLQRHVTARHSPSDNIQWLECAQCASKFKEERYLKQHVKLVHLSGDEIQWFQCEQCASRFKQKSLLRKHVEALHLPEDEIRWFKCEQCAAKFKRKCRLRDHVIARHLGEGEIEWFECYECGGRFKLKKLLQRHIFVKHFVNRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -